Page Index - Data2Dynamics/d2d GitHub Wiki
71 page(s) in this GitHub Wiki:
- Home
- Data2Dynamics Software
- General Information
- Basic Introduction
- Advanced Functionalities
- Statistical Methods
- Computational methods
- Other Advanced Functionalities
- Application Examples
- Copyright notice
- Adapting the PLE Settings
- Advanced events and pre equilibration
- Bachmann_MSB2011
- Becker_Science2010
- Beer_MolBioSyst2014
- Boehm_JProteomeRes2014
- Citating Data2Dynamics
- CitingProjects
- CodeArchitecture
- Computation of integration based prediction bands
- Copyright
- CV_TOO_MUCH_WORK: Possible reasons and solutions
- Debugging residuals
- Discrete Sampling of True Prediction Bands
- Distributed Computing
- Estimating Prediction Uncertainty
- Example models in D2D
- Experimental Design
- Features
- First steps
- How do I reset the solver upon a step input
- How to change the horizontal plotting limits (xlim, time interval, time range)
- How to check and improve optimization
- How to implement a bolus injection
- How to implement a moment ODE model
- How to implement washing and bolus injection
- How to run PLE calculations on a Cluster
- How to set up steady state constraints
- I get the error "Error C2011 'timespec': 'struct' type redefinition" while compiling
- Input estimation
- Installation
- Integration tolerances and modification possibilities
- Introduction Video
- L1 regularization
- Lucarelli_TGFb_2017
- MCMC Methods and Functions
- Meaning of ar.config.fiterrors
- Merkle_PCB2016
- Modeling time delays using the linear chain trick
- Objective function, likelhood and chi square in the d2d framework
- Optimization algorithms available in the d2d framework
- Parallelization
- Parallelization of multi start optimization
- Partial differential equations
- Plotting options and the meaning of ar.config.ploterrors
- Priors in the d2d framework
- Raia_CancerResearch2011
- RTF
- Setting up models
- Setup, compilation, configuration and transfer between systems
- Solving issues with Ceres
- Spline Example: A Modulating Input Function
- Structural Identifiability and Observability Analysis for Nonlinear Dynamic Models
- Support for PEtab
- Swameye_PNAS2003
- Uncertainty analysis
- Using an older version revision of D2D
- Using the bwCluster
- Utilizing Example Collection
- What are the most important fields of the variable ar?
- What are the most important functions in d2d?