Page Index - petermr/CEVOpen GitHub Wiki
154 page(s) in this GitHub Wiki:
- Home
- 1. Main components of intern activity:
- 1.1 Interns and Roles
- 1.2. Mini-projects
- 2. Technology
- 2.1.((py)getpapers, ami)
- 2.2. How are the dictionaries created?
- 2.3. Reporting Errors
- 3. Prerequisites
- 3.1.Install
- 3.1.1. pygetpapers (https://github.com/petermr/pygetpapers)
- 3.1.2. ami_gui.py
- 3.2. git clone
- 4. Overall Goal
- 4.1. Subgoals
- 4.2. About CEVOpen
- 4.4. Required actions:
- 4.5. Update (2021-06-06):
- 4.5.1. Goals and Objectives
- 4.5.2. Roles
- 4.6. Tasks in 2022
- 5. Meeting Records
- 5.1. Biweekly Meetings
- 5.2. Coding Sessions
- 6. Outreach
- 7. Code of Conduct
- Activities Summary: Anuv
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- Agenda Setup
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- Aroma the Game
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- CEVOpen Blog Ideas
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- CEVOpen Intern meetings 2022
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- Classification of Terpene Biosynthesis
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- Coding Session Records: From 31st August
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- Coding Sessions: Meeting Record
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- crop5
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- Data preprocessing and applying Machine learning to extract information from the papers
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- Data Visualization Strategies
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- Dictionary eoActivity
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- Dictionary eoPlant
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- Dictionary eoplant_part
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- Dictionary eoPlantCompound
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- Dictionary Invasive_species
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- Dictionary Plant Secondary Metabolites
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- Dictionary: Gene
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- Dictionary: Overview
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- Dictionary: plant_genus
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- Dictionary: priorities and owners
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- Documentation for docanalysis
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- Five Minute Search, Citizen Science, and Guides
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- Flash Forward Workshop
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- GENE : TPS
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- Gold Standard (Materials and Methods): plant_parts
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- GoldStandard: Abstracts of oil26
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- Ideas: Video Presentation
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- Ideas: Webpage for CEVOpen
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- INI file setup
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- Intern Dictionaries
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- Interns and Roles
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- KARYA Intern Projects
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- Machine Analysis of the phytochemical literature on essential oil compounds
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- Meeting record for 15th Dec 2021
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- Meeting Records: From 29 July
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- Mini Project: Phytochemical ontologies for analyzing the literature on essential oils
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- Mini Project: “Semantic analysis of the literature on Plant Invasive Species”
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- Miniproject: Activity
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- Miniproject: Chemistry (Chemotype)
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- Miniproject: Genes and Genotypes
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- Miniproject: Invasive species
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- Miniproject: Machine Learning
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- Our Project and Machine Learning
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- Outreach
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- Outreach: Open Science Values and Practice
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- Pandas
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- Project Management
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- pyami: config files
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- Rules for Classification of Named terpene pathway
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- Rules for Classification of terpene pathway
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- Scoping through TPS Corpus
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- Semantic analysis of the Literature on essential oils from different part of plants with reported medicinal activity
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- Smoke test for pyami and py4ami
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- Software: installation
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- summary of dictionary plantcompound with minicorpus
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- Summary: Dictionary plant_part
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- Tasks for Interns on Probation
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- Testing dictionaries against corpus
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- Testing of plant_part dictionary
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- THESIS strategy
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- Toolkit
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- Updating dictionaries for more entries
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- Volunteering @CEVOpen
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