Page Index - petermr/CEVOpen GitHub Wiki

90 page(s) in this GitHub Wiki:

• Home
• 1. Main components of intern activity:
• 1.1 Interns and Roles
• 1.2. Mini-projects
• 2. Technology
• 2.1.((py)getpapers, ami)
• 2.2. How are the dictionaries created?
• 2.3. Reporting Errors
• 3. Prerequisites
• 3.1.Install
• 3.1.1. pygetpapers (https://github.com/petermr/pygetpapers)
• 3.1.2. ami_gui.py
• 3.2. git clone
• 4. Overall Goal
• 4.1. Subgoals
• 4.2. About CEVOpen
• 4.4. Required actions:
• 4.5. Update (2021-06-06):
• 4.5.1. Goals and Objectives
• 4.5.2. Roles
• 4.6. Tasks in 2022
• 5. Meeting Records
• 5.1. Biweekly Meetings
• 5.2. Coding Sessions
• 6. Outreach
• 7. Code of Conduct
• Activities Summary: Anuv
• Agenda Setup
• Aroma the Game
• CEVOpen Blog Ideas
• CEVOpen Intern meetings 2022
• Classification of Terpene Biosynthesis
• Coding Session Records: From 31st August
• Coding Sessions: Meeting Record
• crop5
• Data preprocessing and applying Machine learning to extract information from the papers
• Data Visualization Strategies
• Dictionary eoActivity
• Dictionary eoPlant
• Dictionary eoplant_part
• Dictionary eoPlantCompound
• Dictionary Invasive_species
• Dictionary Plant Secondary Metabolites
• Dictionary: Gene
• Dictionary: Overview
• Dictionary: plant_genus
• Dictionary: priorities and owners
• Documentation for docanalysis
• Five Minute Search, Citizen Science, and Guides
• Flash Forward Workshop
• GENE : TPS
• Gold Standard (Materials and Methods): plant_parts
• GoldStandard: Abstracts of oil26
• Ideas: Video Presentation
• Ideas: Webpage for CEVOpen
• INI file setup
• Intern Dictionaries
• Interns and Roles
• KARYA Intern Projects
• Machine Analysis of the phytochemical literature on essential oil compounds
• Meeting record for 15th Dec 2021
• Meeting Records: From 29 July
• Mini Project: Phytochemical ontologies for analyzing the literature on essential oils
• Mini Project: “Semantic analysis of the literature on Plant Invasive Species”
• Miniproject: Activity
• Miniproject: Chemistry (Chemotype)
• Miniproject: Genes and Genotypes
• Miniproject: Invasive species
• Miniproject: Machine Learning
• Our Project and Machine Learning
• Outreach
• Outreach: Open Science Values and Practice
• Pandas
• Project Management
• pyami: config files
• Rules for Classification of Named terpene pathway
• Rules for Classification of terpene pathway
• Scoping through TPS Corpus
• Semantic analysis of the Literature on essential oils from different part of plants with reported medicinal activity
• Smoke test for pyami and py4ami
• Software: installation
• summary of dictionary plantcompound with minicorpus
• Summary: Dictionary plant_part
• Tasks for Interns on Probation
• Testing dictionaries against corpus
• Testing of plant_part dictionary
• THESIS strategy
• Toolkit
• Updating dictionaries for more entries
• Volunteering @CEVOpen