module.implicit.parser - RCChan5/BioLockJ GitHub Wiki

biolockj.module.implicit.parser modules parse classifier output to generate OTU tables.Implicit modules are ignored if included in the Config file unless project.allowImplicitModules=Y.

This package contains the following sub-packages:

1. module.implicit.parser.r16s modules parse module.classifier.r16s reports.
2. module.implicit.parser.wgs modules parse module.classifier.wgs reports.

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ParserModuleImpl

cannot be included in the pipeline run order

Description: Abstract implementation of ParserModule that the other modules extend to inherit standard functionality. Abstract modules cannot be added to a pipeline, but the r16s & WGS sub-packages contain modules that inherit standard parser functionality from this class.

Options:

• report.numHits

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