module.implicit.parser.r16s - RCChan5/BioLockJ GitHub Wiki

biolockj.module.implicit.parser.r16s is a sub package of module.implicit.parser.

Package modules extend ParserModuleImpl to generate OTU tables from 16S classifier output.

Implicit modules are ignored if included in the Config file unless project.allowImplicitModules=Y.

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RdpParser

(added by BioLockJ) #BioModule biolockj.module.implicit.parser.r16s.RdpParser

Description: Build OTU tables from RDP reports.

Options:

• rdp.minThresholdScore

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QiimeParser

(added by BioLockJ) #BioModule biolockj.module.implicit.parser.r16s.QiimeParser

Description: Build OTU tables from QIIME summarize_taxa.py otu_table text file reports.

Options: none

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