module.implicit.parser.wgs - RCChan5/BioLockJ GitHub Wiki

biolockj.module.implicit.parser.wgs is a sub package of module.implicit.parser.

Package modules extend ParserModuleImpl to generate OTU tables from WGS classifier output.
Implicit modules are ignored if included in the Config file unless project.allowImplicitModules=Y.

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(added by BioLockJ) #BioModule biolockj.module.implicit.parser.wgs.Humann2Parser

Description: Build OTU tables from HumanN2 classifier module output.

Options: none

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(added by BioLockJ) #BioModule biolockj.module.implicit.parser.wgs.KrakenParser

Description: Build OTU tables from KRAKEN mpa-format reports.

Options: none

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(added by BioLockJ) #BioModule biolockj.module.implicit.parser.wgs.Kraken2Parser

Description: Build OTU tables from KRAKEN 2 mpa-format reports.

Options: none

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(added by BioLockJ) #BioModule biolockj.module.implicit.parser.wgs.MetaphlanParser

Description: Build OTU tables from Metaphlan2 classifier module reports.

Options: none

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