Page Index - NBISweden/workshop-genome_assembly GitHub Wiki

38 page(s) in this GitHub Wiki:

• Home
• The Genome Assembly Workshop Knowledge Base
• Designing a de novo assembly project
• Working with de novo assembly projects
• Databases
• Arrow
• Background Literature
• Bandage
• Blast
• Blobtools
• Busco
• Data Quantity
• Datasets
• Fastp
• FastQ Screen
• Fastq Validation
• FastQC
• File Formats
• FRCBam
• HBAR DTK
• HGAP4
• Kmer Analysis Toolkit
• Kraken
• MaSuRCA
• Normalisation
• pbvalidate
• Pilon
• Quast
• Reference Filtering
• Sequencing Technologies
• SMRT Tools
• Spades
• Subsampling
• Supernova
• Tool installation on Uppmax
• Tools
• Trimmomatic
• Writing slurm scripts