Page Index - NBISweden/workshop-genome_assembly GitHub Wiki

71 page(s) in this GitHub Wiki:

• Home
• The Genome Assembly Workshop Knowledge Base
• Designing a de novo assembly project
• Working with de novo assembly projects
• Databases
• Arrow
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• Background Literature
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• Bandage
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• Blast
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• Blobtools
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• Busco
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• Data Quantity
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• Datasets
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• Fastp
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• FastQ Screen
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• Fastq Validation
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• FastQC
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• File Formats
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• FRCBam
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• HBAR DTK
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• HGAP4
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• Kmer Analysis Toolkit
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• Kraken
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• MaSuRCA
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• Normalisation
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• pbvalidate
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• Pilon
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• Quast
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• Reference Filtering
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• Sequencing Technologies
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• SMRT Tools
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• Spades
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• Subsampling
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• Supernova
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• Tool installation on Uppmax
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• Tools
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• Trimmomatic
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• Writing slurm scripts
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