Datasets

Special tags:

• [WGA]: Whole Genome Amplified.

Multiple platforms for a Species:

Ecoli K12 substrain MG1655

Platform	Location
Illumina	https://www.ebi.ac.uk/ena/data/view/ERX008638
PacBio	https://github.com/PacificBiosciences/DevNet/wiki/E.-coli-Bacterial-Assembly
ONT Nanopore	https://s3-eu-west-1.amazonaws.com/ont-research/medaka_walkthrough.tar.gz

Plasmodium knowlesi (primate malaria parasite)

Platform	Location
PacBio	https://www.ebi.ac.uk/ena/data/view/PRJNA377737
Hi-C	https://www.ebi.ac.uk/ena/data/view/PRJNA377737

Solanum verrucosum (wild potato) - 722 Mbp - diploid

Platform	Location
Illumina PCR-free (x2 types)	https://www.ebi.ac.uk/ena/data/view/PRJEB20860
Illumina Mate-pair	https://www.ebi.ac.uk/ena/data/view/PRJEB20860
PacBio	https://www.ebi.ac.uk/ena/data/view/PRJEB20860
Hi-C (Dovetail Chicago)	https://www.ebi.ac.uk/ena/data/view/PRJEB20860

Illumina

Description	Location
Ecoli K12 substrain MG1655	https://www.ebi.ac.uk/ena/data/view/ERX008638
[WGA] Cryptosporidium parvum	https://www.ebi.ac.uk/ena/data/view/SRX1522147

PacBio

Description	Location
Ecoli K12 substrain MG1655	https://github.com/PacificBiosciences/DevNet/wiki/E.-coli-Bacterial-Assembly
[WGA] Arabidopsis thaliana	https://www.ebi.ac.uk/ena/data/view/ERX2095150

Nanopore (Oxford Nanopore Technologies - ONT)

Description	Location
Ecoli K12 substrain MG1655	https://s3-eu-west-1.amazonaws.com/ont-research/medaka_walkthrough.tar.gz
Zymo Mock Community	https://github.com/LomanLab/mockcommunity

10X Genomics

Description	Location
Tiny test data	http://cf.10xgenomics.com/supp/assembly/tiny-bcl-2.0.0.tar.gz
Many species	https://support.10xgenomics.com/de-novo-assembly/datasets

Hi-C

Description	Location
Human	https://www.ebi.ac.uk/ena/data/view/SRR6675327