The Genome Assembly Workshop Knowledge Base

Designing a de novo assembly project

Background Literature: Important information on De Novo Assembly.

Sequencing Technologies: Information on the current technologies used in de novo assembly projects.

Working with de novo assembly projects

Data Carpentries: Introduction to the Command Line for Genomics: A more life science based introduction to command line.

Reproducible Research: Practical information on how to make your analyses reproducible. Contains a useful directory structure to keep your work organised (Project Template).

File Formats: Information on common file formats used in de novo assembly.

Databases

• Tools: Tools commonly used by us, including scripts and notes.
• Datasets: Places to download datasets for experimentation.