Page Index - shenjean/diversity GitHub Wiki
12 page(s) in this GitHub Wiki:
- Home
- Step 1: Create QIIME2 manifest file
- Step 2: Import files into QIIME2
- Step 3: Create QIIME2 compatible metadata file
- Step 4: Denoising with DADA2
- Step 5: Generate a tree for phylogenetic diversity analyses
- Step 6: Taxonomy assignment
- Step 7.0: Subsampling and diversity analyses
- Step 7.1: Testing for statistical correlations between metadata categories and diversity data
- Step 7.2: Differential abundance analyses
- Step 7.3: Predicting functional profiles from count data
- Step 7.4 Data visualization and analyses in R