Page Index - shenjean/diversity GitHub Wiki

12 page(s) in this GitHub Wiki:

• Home
• Step 1: Create QIIME2 manifest file
• Step 2: Import files into QIIME2
• Step 3: Create QIIME2 compatible metadata file
• Step 4: Denoising with DADA2
• Step 5: Generate a tree for phylogenetic diversity analyses
• Step 6: Taxonomy assignment
• Step 7.0: Subsampling and diversity analyses
• Step 7.1: Testing for statistical correlations between metadata categories and diversity data
• Step 7.2: Differential abundance analyses
• Step 7.3: Predicting functional profiles from count data
• Step 7.4 Data visualization and analyses in R