Page Index - shenjean/diversity GitHub Wiki
23 page(s) in this GitHub Wiki:
- Home
- Step 1: Create QIIME2 manifest file
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- Step 2: Import files into QIIME2
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- Step 3: Create QIIME2 compatible metadata file
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- Step 4: Denoising with DADA2
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- Step 5: Generate a tree for phylogenetic diversity analyses
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- Step 6: Taxonomy assignment
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- Step 7.0: Subsampling and diversity analyses
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- Step 7.1: Testing for statistical correlations between metadata categories and diversity data
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- Step 7.2: Differential abundance analyses
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- Step 7.3: Predicting functional profiles from count data
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- Step 7.4 Data visualization and analyses in R
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