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Welcome to the QIIME2-workflow wiki!

Useful papers/guides:

1. Protocol: Using QIIME2 with microbiome data

Estaki, M. et al. (2020). QIIME 2 enables comprehensive end‐to‐end analysis of diverse microbiome data and comparative studies with publicly available data. Current Protocols in Bioinformatics, 70, e100.

2. Paper: Best practices for analysing microbiomes

Knight, R., Vrbanac, A., Taylor, B.C. et al. Best practices for analysing microbiomes. Nat Rev Microbiol 16, 410–422 (2018).

3. Book: Legendre and Legendre. Numerical Ecology - comprehensive details on ecology-related metrics (e.g. beta diversity, ordination plots)