Page Index - sanger-pathogens/ariba GitHub Wiki

20 page(s) in this GitHub Wiki:

• Home
• ARIBA: Antimicrobial Resistance Identification By Assembly
• Installation
• Synopsis
• Tasks
• MLST calling with ARIBA
• Task: aln2meta
• Task: expandflag
• Task: flag
• Task: getref
• Task: micplot
• Task: prepareref
• Task: pubmlstget
• Task: pubmlstspecies
• Task: refquery
• Task: run
• Task: summary
• Task: test
• Task: version
• The assembled column from ariba summary