Task: pubmlstget - sanger-pathogens/ariba GitHub Wiki
Task: pubmlstget
This can be used to download data for a given species from PubMLST.
For example, to download S. aureus data to a new directory called out
:
ariba pubmlstget 'Staphylococcus aureus' out
This makes all files needed to make an ARIBA database with ariba prepareref
.
Options
The only option is --verbose
, to be verbose instead of the default, which is to be silent.