Home - ekatrukha/BigTrace GitHub Wiki
Welcome to the BigTrace wiki!
This is a FIJI plugin for tracing and analysis of curvilinear structures in volumetric microscopy datasets
(using BigVolumeViewer for visualization).
BigTrace provides an interface of 3D ROIs (points, straight/curved lines, planes)
for semi-manual/semi-automatic segmentation of lines, curves, and spotty objects.
The plugin is scriptable using ImageJ macros.
Main pages of Wiki to start with:
Content:
- Display and navigation
- Creating ROIs
- Panels:
- Semi-auto tracing
- One click tracing
- ROI shape interpolation
- File format
- Main shortcuts
- Updates history