Code Modules - apache/ctakes GitHub Wiki
Apache cTAKES has a collection of different code modules, each handling different aspects of clinical NLP.
Below is a list of cTAKES code modules. Click on the Module Name to learn more about it.
| Module Name | Purpose or Description |
|---|---|
| ctakes-assertion | Determines mention real-world status, such as negated, uncertain or used in a generic way. |
| ctakes-assertion-zoner | |
| ctakes-chunker | Identifies multi-token chunks, such as noun phrases and verb phrases. |
| ctakes-clinical-pipeline | A piper file with a pipeline for commonly desired information. Deprecated. |
| ctakes-constituency-parser | Adds terminal treebank nodes, required for coreferences. |
| ctakes-context-tokenizer | Creates special token types such as dates and fractions. |
| ctakes-core | Code and resources required by all or most other cTAKES modules. |
| ctakes-coreference | Identifies mentions that refer to the same real-world entity. |
| ctakes-dependency-parser | Finds dependencies between words. |
| ctakes-dictionary-lookup | Finds entries of text provided in dictionaries. Deprecated. |
| ctakes-dictionary-lookup-fast | Identifies terms in text and normalizes them to codes in an ontology. |
| ctakes-distribution | Builds a binary installation of the cTAKES application. |
| ctakes-dockhand | Small Installation tool. |
| ctakes-drug-ner | Identifies attributes of drug mentions. Deprecated. |
| ctakes-examples | Examples of code, resources, and piper files. |
| ctakes-fhir | Read and Writes basic FHIR R2 files. |
| ctakes-gui | Code used for cTAKES GUI tools. |
| ctakes-lvg | Creates lexical variants. Deprecated. |
| ctakes-mastif-zoner | |
| ctakes-ne-contexts | Provides a mechanism for examining the context of existing annotations. |
| ctakes-pbj | A Python Bridge to Java. |
| ctakes-pos-tagger | A UIMA wrapper around the popular OpenNLP part-of-speech tagger. |
| ctakes-preprocessor | A usable CDA sectionizer. Deprecated. |
| ctakes-regression-test | Old tests. Deprecated. |
| ctakes-relation-extractor | Identifies relations between certain events, entities, and modifiers. |
| ctakes-side-effect | Extracts physician-asserted drug side effects. |
| ctakes-smoking-status | Identifies patient smoking status. |
| ctakes-template-filler | Copy attributes from one annotation to another. Deprecated. |
| ctakes-temporal | Identifies events, temporal expressions, and their relations on a timeline. |
| ctakes-tiny-rest | Tiny example rest service. |
| ctakes-type-system | Represents common clinical elements, document elements, and stsandard NLP elements. |
| ctakes-utils | Utilities for old code. Deprecated. |
| ctakes-web-rest | Builds a standalone product, Apache cTaKES Web REST. |
| ctakes-ytex | Alternatives for some basic annotators. Deprecated. |
| ctakes-ytex-uima | Alternatives for some basic annotators. Deprecated. |
| ctakes-ytex-web | Simple Web application for basic NLP tasks. Deprecated. |