Page Index - UU-cellbiology/averageBasalBodies GitHub Wiki

36 page(s) in this GitHub Wiki:

• Home
• Welcome to the averageBasalBodies wiki!
• Input data
• Workflow
• (part 1) Processing parameters
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• (part 1) Step 0: auto ROIs generation
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• (part 1) Step 1: detecting basal bodies (BB) in 3D
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• (part 1) Step 2: extracting basal bodies
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• (part 1) Step 3: finding orientation (basal foot)
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• (part 1) Step 4: averaging BB per cell
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• (part 1) Step 5: average BB shape quantification
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• (part 2) Step 1: Segmenting basal body
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• (part 2) Step 2: Segmentation verification
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• (part 2) Step 3: Rescaling shapes
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• (part 2) Step 4: Registration
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• Averaging of basal bodies per cell
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• Normalization (rescaling) of averages among cell
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• Quantification of proteins localizations
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• required software and plugins
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• Updates history
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