Page Index - STAR-Fusion/STAR-Fusion GitHub Wiki

29 page(s) in this GitHub Wiki:

• Home
• Obtaining and Installing STAR-Fusion
• Getting started
• Running STAR-Fusion
• Running STAR-Fusion starting with FASTQ files (typical):
• Alternatively, Kickstart mode: running STAR yourself, and then running STAR-Fusion using the existing outputs
• Output from STAR-Fusion
• Further Inspection, Visualization, and Validation?
• Examine Effect of Fusions on Coding Regions
• Extract sequences adjacent to the fusion transcript breakpoint
• De novo reconstruct fusion transcripts using Trinity
• Example data and execution:
• Want to use Docker?
• Want to use Singularity?
• Want to use Terra?
• Contact Us
• Acknowledgements
• Referencing STAR-Fusion
• Funding
• Conda installation
• Galaxy toolshed installation of the tool
• installation troubleshooting
• installing star fusion
• rebuild_ctat_genome_lib_indices
• Single Cell Visualization
• STAR Fusion FAQ
• STAR Fusion release and CTAT Genome Lib Compatibility Matrix
• STAR Fusion scRNA seq
• Terra