Page Index - MorrellLAB/sequence_handling GitHub Wiki
29 page(s) in this GitHub Wiki:
- Home
- Getting Started
- Installation
- Computational Requirements
- Dependency Requirements
- Next Steps
- Additional Resources
- Adapter_Trimming
- Configuration
- Coverage_Mapping
- Create_HC_Subset
- Dependencies
- FAQ
- Genomics_DB_Import
- Genotype_GVCFs
- Haplotype_Caller
- Indel_Realigner
- Pre_Variant_Filtering
- Quality_Assessment
- Quality_Trimming
- Read_Mapping
- Realigner_Target_Creator
- Recommended_Workflow
- SAM_Processing
- sample_list_generator.sh
- Slurm specific options
- Variant_Analysis
- Variant_Filtering
- Variant_Recalibrator