Page Index - Golob-Minot/geneshot GitHub Wiki

47 page(s) in this GitHub Wiki:

• Home
• Alignment Based Analysis
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• Analysis Modes
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• Co Abundant Gene Clustering
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• De novo Assembly
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• Download from SRA
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• Execution Backend
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• External Gene Catalog
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• Extracting the abundances for a single gene
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• Extracting the gene annotation table
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• Genome Alignments
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• Getting Started
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• Input File Format
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• Nextflow Configuration File
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• Nextflow Version
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• Notes on Metadata
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• Output Files
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• Preprocessing WGS Data
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• Reading HDF5 with R
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• Running Geneshot
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• Statistical Analysis
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• Summarizing genes by functional annotation
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• Useful Options
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• What Is A Gene?
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