Page Index - Golob-Minot/geneshot GitHub Wiki

24 page(s) in this GitHub Wiki:

• Home
• Alignment Based Analysis
• Analysis Modes
• Co Abundant Gene Clustering
• De novo Assembly
• Download from SRA
• Execution Backend
• External Gene Catalog
• Extracting the abundances for a single gene
• Extracting the gene annotation table
• Genome Alignments
• Getting Started
• Input File Format
• Nextflow Configuration File
• Nextflow Version
• Notes on Metadata
• Output Files
• Preprocessing WGS Data
• Reading HDF5 with R
• Running Geneshot
• Statistical Analysis
• Summarizing genes by functional annotation
• Useful Options
• What Is A Gene?