Useful Options - Golob-Minot/geneshot GitHub Wiki

There are a handful of useful Nextflow options which are nice to take advantage of.

Execution Report

Use the -with-report flag to write out a summary of the analysis execution as HTML.

Working Directory

Use the -work-dir flag to specify the working directory for Nextflow execution (docs).

Call Caching

Use the -resume flag to automatically retrieve cached calls.