Page Index - GarzaLab/Documentation GitHub Wiki

29 page(s) in this GitHub Wiki:

• Home
• I'm new to the lab, what should I do first?
• Quick Reference Guide
• Lab Manual & Code of Conduct
• Acquire rsfMRI Bruker 7T
• Average T1w or T2w repetitions Bruker 7T
• Bruker ClinScan 7T Tips
• Change Extension in Loops
• Convert DICOM from Bruker Paravision to regular DICOM or Bruker Paravision to Nifti
• Create image from data for QC
• Create Template brain
• Defacing 3D anatomical data
• Deformation Based Morphometry MBM.py no atlas
• Deformation Based Morphometry MBM.py with atlas
• Dicom to BIDS
• Display & Register: Tools for MINC visualization
• Download DICOM from Bruker 7T
• FMRIPREP preprocessing
• For Newbies
• Gibbs Ringing
• Lab Manual and Code of Conduct
• Loops
• MRIQC for BIDS
• Neuroimaging Visualization Resources
• Preprocessing Rat Functional in vivo
• Preprocessing Rat Structural in vivo
• Problems installing Trackvis and Diffusion Toolkit in Ubuntu
• Qbatch tips
• Two Level DBM model in rodents and humans