MRIQC

How to run MRIQC from Docker.

First level analysis

sudo docker run -i --rm -v /media/egarza/INP_MRI_Backup/projects/INP/addimex_tms/data/mri/bids:/bids_dataset:ro -v /media/egarza/INP_MRI_Backup/projects/INP/addimex_tms/data/mri/outputs_mriqc:/outputs bids/mriqc /bids_dataset /outputs participant --participant_label 010 011 012 013 014

Second level analysis

sudo docker run -i --rm -v /media/egarza/INP_MRI_Backup/projects/INP/addimex_tms/data/mri/bids:/bids_dataset:ro -v /media/egarza/INP_MRI_Backup/projects/INP/addimex_tms/data/mri/outputs_mriqc:/outputs bids/mriqc /bids_dataset /outputs group