Page Index - CRBS/cdeep3m GitHub Wiki
85 page(s) in this GitHub Wiki:
- Home
- Add Validation to training
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- Breakdown of CloudFormation Template
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- Breakdown of Resources section of CloudFormation Template
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- caffepredict.sh
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- caffetrain.sh
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- Check and increase AWS EC2 limits
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- CreateTrainJob.m
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- Creating Cdeep3M Release
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- Data Dictionary
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- Datasets and trained models preloaded on CDeep3M via Amazon AWS Cloud
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- Demorun 1 Running prediction with pre trained model
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- Demorun 2 Running small training and prediction with mito testsample dataset
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- Developer topics
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- Disclaimer
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- Download datasettwo
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- EC2 Resource Type
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- Finding Deep Learning AMI
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- Format of h5 augmented training data
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- Format of input image training data
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- How CDeep3M release system works
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- How to access CDeep3M cloud
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- How to import key pair into us west 2 region
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- How to retrain a pretrained network
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- How to troubleshoot CloudFormation template
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- Launching CDeep3m via AWS CloudFormation
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- Linux IMOD install instructions
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- Mac IMOD install instructions
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- PreprocessTrainingData.m
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- Prototype AWS command line invocation
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- Run CDeep3M training and prediction
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- runprediction.sh
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- runtraining.sh
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- S3 buckets needed for release
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- Shutting down CDeep3M AWS CloudFormation
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- Speed up
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- trainworker.sh
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- Tutorial 1 Generating training data with IMOD
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- Tutorial 2 Launch and train CDeep3M
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- Tutorial 3 Run CDeep3M
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- Tutorial 4 Post processing of Automatically Generated Segmentations
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- Tutorial required tools
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- Windows IMOD install instructions
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