Page Index - CRBS/cdeep3m GitHub Wiki

43 page(s) in this GitHub Wiki:

• Home
• Add Validation to training
• Breakdown of CloudFormation Template
• Breakdown of Resources section of CloudFormation Template
• caffepredict.sh
• caffetrain.sh
• Check and increase AWS EC2 limits
• CreateTrainJob.m
• Creating Cdeep3M Release
• Data Dictionary
• Datasets and trained models preloaded on CDeep3M via Amazon AWS Cloud
• Demorun 1 Running prediction with pre trained model
• Demorun 2 Running small training and prediction with mito testsample dataset
• Developer topics
• Disclaimer
• Download datasettwo
• EC2 Resource Type
• Finding Deep Learning AMI
• Format of h5 augmented training data
• Format of input image training data
• How CDeep3M release system works
• How to access CDeep3M cloud
• How to import key pair into us west 2 region
• How to retrain a pretrained network
• How to troubleshoot CloudFormation template
• Launching CDeep3m via AWS CloudFormation
• Linux IMOD install instructions
• Mac IMOD install instructions
• PreprocessTrainingData.m
• Prototype AWS command line invocation
• Run CDeep3M training and prediction
• runprediction.sh
• runtraining.sh
• S3 buckets needed for release
• Shutting down CDeep3M AWS CloudFormation
• Speed up
• trainworker.sh
• Tutorial 1 Generating training data with IMOD
• Tutorial 2 Launch and train CDeep3M
• Tutorial 3 Run CDeep3M
• Tutorial 4 Post processing of Automatically Generated Segmentations
• Tutorial required tools
• Windows IMOD install instructions