Page Index - srkoppolu/SK_RNA-Seq GitHub Wiki
18 page(s) in this GitHub Wiki:
- Home
- Generalized template for RNA-Seq pipeline:
- Step 1: Quality Analysis
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- Step 2: Filtering
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- Step 3: Alignment
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- Step 3a: Genome Alignment (STAR, HISAT2)
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- Step 3b: Transcriptome Alignment (BWA, Bowtie2)
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- Step 4: Alignment Quality Control
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- Step 5: Count Mapped Reads
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- Step 6: Differential Expression Analysis
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