Page Index - rrwick/Trycycler GitHub Wiki
31 page(s) in this GitHub Wiki:
- Home
- The problem
- The solution
- An important caveat
- Where to begin?
- 2025 update
- Accuracy vs depth
- Bad dataset analysis
- Clustering contigs
- Demo datasets
- FAQ and miscellaneous tips
- Generating a consensus
- Generating assemblies
- Good dataset analysis
- Great dataset analysis
- Guide to bacterial genome assembly
- How circularisation repair works
- How multiple sequence alignment partitioning works
- How read subsampling works
- How to run Trycycler
- How variants are chosen for the consensus sequence
- Illustrated pipeline overview
- Installation
- Mediocre dataset analysis
- Multiple sequence alignment
- Partitioning reads
- Polishing after Trycycler
- Quick start
- Reconciling contigs
- Software requirements
- Starting sequences for circular replicons