Demo datasets - rrwick/Trycycler GitHub Wiki

To help you get some experience with Trycycler, I've produced demo datasets that you can work through!

Each of these datasets:

• Uses a Chlamydia trachomatis genome because it's very small which helps to keep file sizes and runtimes down.
• Contains a simulated read set made from that genome. I used simulated reads because they enable an exact ground truth genome and allowed me to generate assemblies of varying input quality.
• Contains pre-generated input assemblies, so you can begin the process at the Clustering contigs step. I.e. you don't have to conduct the assemblies yourself.
• Has a corresponding analysis of mine: an outline of the actions I took when running Trycycler on the dataset.

Try running Trycycler on each dataset before reading my analysis – i.e. first attempt making a Trycycler assembly for each (I recommend in order of increasing difficulty) and then read my analysis so you can compare your process/results to mine.

Download link	My analysis
Great dataset	Great dataset analysis
Good dataset	Good dataset analysis
Mediocre dataset	Mediocre dataset analysis
Bad dataset	Bad dataset analysis