Page Index - pwollstadt/IDTxl GitHub Wiki

63 page(s) in this GitHub Wiki:

• Home
• Installation
• Citation
• Your first Information Network Inference with IDTxl
• Theoretical background
• Why multivariate transfer entropy estimation?
• Want to know more?
• Tutorials
• Algorithms for network inference
• Algorithms for node dynamics
• Core estimators
• Input/Output
• Documentation
• Developer's section
• Misc
• Adding a new estimator to IDTxl
• Auto generate class diagrams for IDTxl
• Checkpointing
• CMI Estimators
• Combine Single Target Results
• Conditioning on Specific Variables
• Contributing to IDTxl
• Documentation and Sphinx
• Editable installation
• Export Brain Net Viewer
• Export networkx graph
• FieldTrip Importer
• Generation of Surrogate Data
• Hardware and Benchmarking
• IDTxl Packaging
• Installation and Requirements
• Installation of history dependence (HDE) estimator
• Lags PID
• Matlab Importer
• Maximum Lag
• MPI Parallelization
• Multivariate Transfer Entropy estimation
• Parallel Analysis Using PBS Job Scheduler
• PID Estimators
• Plotting of network comparison results
• Publications using IDTxl
• Results Dictionary
• Runtimes and Benchmarking
• Single Process analysis
• Single Target analysis
• Single Target analysis (PID)
• Source and Target Lags
• Statistical comparison between individual links within the same network
• Statistical comparison between sets of networks
• Statistical Significance Tests
• Synthetic Test Data
• Testing
• The Data Class
• The Results Class
• The Spiketime Data Class
• Theoretical Introduction
• Usage of core estimators
• Variable names used in IDTxl
• Virtual environments on Ubuntu 14.04
• Visualise Network
• Whole Network Analysis
• Whole Network Analysis (AIS)
• Whole Network Analysis (PID)