Page Index - genetics-of-dna-methylation-consortium/godmc_phase2 GitHub Wiki
98 page(s) in this GitHub Wiki:
- Home
- Design overview
- Content overview
- Perform a mQTL analysis
- GWAS of DNAm derived phenotypes
- EWAS of polygenic risk scores
- How to use the wiki
- What to do if it goes wrong
- Submitting an issue
- General Guidelines
- 1000G imputation
- Please reload this page
- Additionalfiles easyQC.multi.AFCHECK.png
- Please reload this page
- Analysis of chromosome X and chromosome Y CpGs
- Please reload this page
- Analyst Quick Start Guide to Pipeline
- Please reload this page
- Case control studies
- Please reload this page
- Check data
- Please reload this page
- chromosome X
- Please reload this page
- Convert impute2 imputed data to bestguess data
- Please reload this page
- Convert mach minimac imputed data to bestguess data (.info .dose or .mlinfo .mldose files)
- Please reload this page
- Convert minimac3 imputed data to bestguess data (vcf files)
- Please reload this page
- Covariate data
- Please reload this page
- Encryption
- Please reload this page
- Example code to submit 07b script
- Please reload this page
- FAQ
- Please reload this page
- Imputed genetic data
- Please reload this page
- Install and set up
- Please reload this page
- Instructions for developers
- Please reload this page
- Longitudinal studies
- Please reload this page
- new cohorts
- Please reload this page
- Normalised methylation data
- Please reload this page
- Participation requirements
- Please reload this page
- Process methylation data
- Please reload this page
- Process SNP data
- Please reload this page
- Run cell type interacting meQTL analysis
- Please reload this page
- Run GWAS of age acceleration
- Please reload this page
- Run GWAS of cell counts
- Please reload this page
- Run GWAS of MZ twinning
- Please reload this page
- Run GWAS of smoking
- Please reload this page
- Run GWAS of the imprinted gene nc886
- Please reload this page
- Run inversion mQTL analysis
- Please reload this page
- Run meQTL analysis
- Please reload this page
- Run PRS EWAS
- Please reload this page
- Run variance meQTL analysis
- Please reload this page
- Running script 3b and 3e on a cluster
- Please reload this page
- Script Flowchart
- Please reload this page
- Set up folders
- Please reload this page
- Studies with both 450k and EPIC
- Please reload this page
- Studies with both EPICv1 and EPICv2
- Please reload this page
- Submitting an issue
- Please reload this page
- sudo rights
- Please reload this page
- System requirements
- Please reload this page
- What if I have a dataset with both EPIC v1 and v2?
- Please reload this page
- What if I have multiple datasets to process?
- Please reload this page
- What to do if it goes wrong
- Please reload this page
