Page Index - fahsuanlin/labmanual GitHub Wiki

151 page(s) in this GitHub Wiki:

• Home
• Structural MRI
• functional MRI (fMRI)
• EEG-MRI
• MEG
• Stereotatic EEG (SEEG)
• Transcranial magnetic stimulation
• Bruker 7T animal MRI
• Visualization
• Sample data
• MRI coils
• 00. prepare the analysis environment
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• 01. FreeSurfer coordinate system
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• 02. EEG analysis stream
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• 03. MEG analysis stream
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• 04. SMS InI analysis
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• 05. layer fMRI analysis
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• 06. SEEG source modeling
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• 07. SEEG electrode analysis
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• 08. SEEG group analysis
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• 09. unpack dicom
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• 0A. FreeSurfer reconstruction
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• 10. fMRI data preprocessing
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• 11. fMRI analysis
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• 12. fMRI inter subject correlation analysis
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• 13. Morph fMRI data into a template surface volume
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• 15. Use toolbox by git
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• 16. Stimuli presentation and response collection in fMRI by Psychtoolbox
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• 17. DTI analysis
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• 18. Suppression of artifacts in EEG collected inside MRI
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• 19. Rendering scripts
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• 20. EEG measurement setup
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• 21. Sample data: Steady state visual potential
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• 22. Sample data: physiological noise in Alzheimer's disease patients and health controls
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• 23. Image processing in BrainSight
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• 24. Coil: TIM 4G coil test rig
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• 25. Sample data: perspective taking fMRI data
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• 26. Coordinates of the template subject in FreeSurfer
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• 27. Connec to Polaris Vega camera
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• 28. SMS InI acquisition
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• 29. TMS E field modeling
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• 30. Bruker 7T scanning
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• 31: Sample data: social interaction EEG data
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• 32: Sample data: SEEG recording during music listening
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• 33. EEG fMRI acquisition: MRI control
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• 34. Coil: Coil code read and write
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• 35. Sample data: SEEG of listening to human dialog in Madarin
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• 36. Quick sheet about Freesurfer reconstructions
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• 37. EEG MRI analysis
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• 38. Registration between SMS‐InI and anatomical MRI
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• 39. Sample data: EEG‐MRI during music listening
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• 40: Sample data: Human Connectome Project (HCP) fMRI
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• 41. Coil: 3T coil schematics
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• 42: Coil: 3T coil bench testing
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• 43: Coil housing printing
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• 44. Trigger box
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• 45. Coil: Matching circuits
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• 46. Resting‐state fMRI analysis
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• 47. TMS E‐field modeling with interactive TMS coil placement
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• 48. Group‐level fMRI analysis
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• 49. Field mapping
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• 49. TMS E‐field modeling with Matlab GUI
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• 50. TMS E‐field modeling with Matlab scripting
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• 51. fMRI clustering
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• 52. BigBrain for FreeSurfer
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• 53: UK Biobank RAP jump start
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• 54. Genearal linear model on fMRI data (individual and group analysis)
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• 55. EEG topology preparation and use
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• 56. Functional MRI‐guided TMS
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• 57. UK Biobank GWAS
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• 58. Webpage for movie viewing and rating
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• 59. Webpage for continuous rating on a movie in Youtube
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• 60. Webpage for dynamic rating linked to arbitrary Youtube video ID and Google sheet
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• 61. Google server for neuroimagng analysis
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• 62: EEG automatic sensor localization
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• 63. VENAT: venous atlas
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• 64. MRI protocols
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• 66. Mount google drive on servers
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• A: SEEG data archive
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• B: Get started.
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• C. File transfer to from SRI
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