30. Bruker 7T scanning - fahsuanlin/labmanual GitHub Wiki

1. Data remote access

The S-ground Bruker can be accessed via the network on bruker2 (142.76.29.197). Data are at /opt/PV6.0.1/data/user_name (or your folder when you are logged in).

The backup server titan (142.76.25.14) has the backup at /luna/backup/bruker2/PV6.0.1/data/user_name.

2. Protocol

Our protocol is under Object: Mouse -> Region: Head-> Application: fMRI

3. Matlab code

load_bruker_images.m should read the data in and save it as a Matlab matrix. write_bruker_scan_details.m should create a text file summary of the scans run and some relevant parameters.

A zipped folder here includes all scripts from Wendy Oaken.

The image data is in the relevant scan folder number under /pdata/1/2dseq. The remaining files are mostly human-readable text files with scan information; the most relevant ones are probably method and acqp. (method is a reflection of what you enter on the scanner console before running and then acqp contains the actual acquisition parameters when it runs. So there is overlap of information but some is only in one file).