Page Index - ccsstudentmentors/tutorials GitHub Wiki

23 page(s) in this GitHub Wiki:

• Authors
• CCS Student Mentors Tutorials
• Citation
• Counting Reads
• DESeq2 Multivariate Analysis
• DESeq2 Simple Analysis
• DESeq2 Simple Analysis Gene Name
• EdgeR Multivariate Analysis
• EdgeR Simple Analysis
• Finding the FastQ Files
• gene vs isoform
• Intro Gene Level
• Intro to Differential Expression Analysis
• Intro to Tophat
• Loading files onto server
• Preparing DESeq2
• Preparing EdgeR
• Preparing to use STAR
• Preparing to Use Tophat
• Running STAR
• Running Tophat
• Sorting reads
• Suggested Folder Organization