Page Index - barrettlab/2021-Genomics-bootcamp GitHub Wiki
21 page(s) in this GitHub Wiki:
- Home
- "Species tree" estimation
- 2022 Biol 320 Lonicera japonica invasion history animation
- 2022 Biol 320 Migseq data processing commands on myco server
- 2022 Biol 320 Population genomic analyses with R
- Analysis of contemporary and historical population stucture and admixture with 'dystruct'
- Home and schedule
- I. Getting Started with UNIX
- II. Illumina data quality
- III. Assembling plastid genomes
- iPyRAD introductory tutorial with simulated data with Maribeth Latvis
- ISSRseq and downstream commands for River on myco server
- IV. Lab Protocol for ISSR seq
- Low coverage phenotype association with angsd
- Plastid Genome Annotation with GeSeq
- Population genomic analyses with sambaR
- Preliminaries: Using the commandline, signing into a server, and submitting jobs to a HPC
- Processing of whole plastid genomes, alignment, and partitioning for phylogenomic analysis
- Running the ISSRseq pipeline for ISSR data or plastomes
- Sequence capture data processing assembly with secapr
- V. Running the ISSR seq data processing pipeline