| biolockj [config_path] |
Start a pipeline using the Configuration properties in [config_path].Pipeline output directory is created under $BLJ_PROJ. |
| blj_build |
Run build.xml ant script to build BioLockJ.jar from Java source code. |
| blj_complete |
Manually completes the current module and pipeline status. |
| blj_config |
The install script updates ~/.bash_profile to call blj_config.Adds BioLockJ Commands into your $PATH & sets program variables: $BLJ: BioLockJ application directory. $BLJ_SCRIPT: BioLockJ script directory containing executable script files. $BLJ_PROJ: Root pipeline directory used in multiple Commands. |
| blj_downlaod |
If on cluster, print command syntax to download current or most recent $BLJ_PROJ pipeline analysis to your local workstation directory: pipeline.downloadDir. |
| blj_functions |
This script contains common functions used in BioLockJ. |
| blj_go |
Go to most recent $BLJ_PROJ pipeline & list contents. |
| blj_log |
Tail last 1K lines from current or most recent $BLJ_PROJ pipeline log file. |
| blj_reset |
Reset pipeline status to incomplete.If restarted, execution will start with the current module. |
| blj_summary |
Print current or most recent $BLJ_PROJ pipeline summary. |