Page Index - JaneliaSciComp/JRCLUST GitHub Wiki

361 page(s) in this GitHub Wiki:

• Home
• Welcome to the JRCLUST wiki
• Note: This documentation is out of date
• .meta file
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• assign_clu_count_()
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• assignCluster_()
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• Batch file
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• blank_period_ms
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• blank_thresh
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• calc_dc2_()
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• center of mass
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• Cluster struct (S_clu)
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• cluster_spacetime_()
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• Code listing
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• Combining multiple files
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• Command line interface
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• Command listing
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• common average reference
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• compute_dc2_()
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• csFile_merge
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• cuda_delta_()
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• cuda_rho_()
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• dc
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• dc_percent
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• default.prm
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• delta1_cut
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• detect_()
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• detect_spikes_()
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• detrend_local_()
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• dimm_fet
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• dimm_raw
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• dimm_spk
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• dimm_wav
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• DPCLUS
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• export quality
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• fDetectBipolar
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• fEllip
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• fet12_site_()
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• fet2clu_()
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• FFT cleanup
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• fft_clean()
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• fft_thresh
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• fGpu
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• file2spk_()
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• filt_car_()
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• filtOrder
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• find_peak_()
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• findRange_()
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• fInterp_fet
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• fInverse_file
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• fRealign_spk
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• freqLim
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• Function listing
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• Generating trial files
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• getBytes_()
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• git pull
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• Global variables
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• gpca
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• help
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• icl
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• Input and output files
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• Input file format
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• Installation
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• int16
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• is_detected_()
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• ISI ratio
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• Isolation distance
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• jrc3.m
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• jrc3_cuda_delta.cu
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• jrc3_cuda_rho.cu
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• JRCLUST pipeline
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• JRCLUST wiki
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• L ratio
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• LCAR
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• MAD
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• Main GUI
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• makeprm_()
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• Manual GUI
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• manual_()
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• Master struct (S0)
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• maxDist_site_merge_um
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• maxDist_site_spk_um
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• maxDist_site_um
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• maxSite
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• maxWavCor
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• mn2tn_wav_()
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• mrPv_global
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• mrWavCor
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• nDiff_filt
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• nFeatures
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• nLoads_max_preview
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• nneigh_min_detect
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• nPad_filt
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• nPcPerChan
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• nRepeat_merge
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• nSamples_spk
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• nSites_fet
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• nSites_ref
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• nSites_spk
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• nSpikes
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• nTime_clu
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• P
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• Parameters struct (P)
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• Performance benchmark
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• plot_FigCorr_()
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• plot_FigHist_()
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• plot_FigIsi_()
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• plot_FigMap_()
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• plot_FigPos_()
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• plot_FigProj_()
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• plot_FigRD_()
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• plot_FigTime_()
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• plot_FigWav_()
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• plot_FigWavCor_()
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• post_merge_()
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• post_merge_wav_()
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• postCluster_()
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• Preview GUI
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• preview_()
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• Probe file
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• Probe GUI
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• project_interp_()
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• PSTH view
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• qqFactor
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• Quality metrics
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• Requirements and Installation
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• rho_cut
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• Rodriguez Laio clustering
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• S0
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• S_clu
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• S_clu_position_()
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• S_clu_quality_()
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• S_clu_wav_()
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• S_clu_wavcor_()
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• S_clu_wavcor_merge_()
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• save0_()
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• sec_per_load_preview
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• sort_()
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• sort_file_merge
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• spikeDetectSingle_fast_()
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• SpikeGLX
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• spikeMerge_()
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• spikeMerge_single_()
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• spiking event
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• spk_pos_()
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• spkLim_ms
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• spkLim_raw
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• spkLim_raw_ms
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• spkRefrac_ms
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• spkwav_car_()
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• sRateHz
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• Step by step tutorial
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• Supported recording format
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• Supported recording formats
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• tbin_psth
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• Tetrodes sorting
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• tlim_psth
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• tnWav_raw
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• tnWav_spk
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• Traces GUI
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• trFet_spk
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• trWav2fet_()
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• uint16
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• User configuration file
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• uV_per_bit
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• Variable naming convention
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• vcCommonRef
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• vcDetrend_postclu
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• vcFet
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• vcFile_thresh
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• vcFile_trial
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• vcFilter
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• vcSpkRef
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• viClu
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• Video tutorials
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• viSite2_spk
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• viSite_spk
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• viSiteZero
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• viTime_spk
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• vnThresh_site
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• wav2spk_()
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• wav_car_()
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