Page Index - HNHalstead/Genome_Analysis GitHub Wiki
16 page(s) in this GitHub Wiki:
- Home
- Genome_Analysis Motivation
- A Repository for an Alternative Pipeline as used in RNA-seq and Tn-seq reveal fitness determinants of vancomycin-resistant Enterococcus faecium during growth in human serum* for the sake of differential expression and other analysis (Zhang, 2017).
- About Genome Analysis Wiki Pages
- Introduction
- Analysis Overview
- The following schemas contain the workflow of analysis of E.faecium sequencing data to look at the fitness determinants of VRE growth in human serum. These steps are explained in more depth in the Methods and Intermediate Results and Results and Discussion pages.
- Genome Assembly and Annotation was finished by 12.04.2019, Comparative genomics was finished by 25.04.2019, and RNA mapping was finished by 07.05.2019
- Methods and Intermediate Results
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- Questions Regarding Analysis Tools
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- References
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- Results and Discussion
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