Page Index - Ecogenomics/GTDBNCBI GitHub Wiki
72 page(s) in this GitHub Wiki:
- Home
- GTDB Wiki
- Update to a new RefSeq/GenBank release (Bacteria, Archaea, and Fungi)
- Other guides
- Running the GTDB tool
- Deprecated
- BioProjects verified to have isolates
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- Create GTDB SSU tree
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- Create SILVA SSU mapping file
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- Data dictionary
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- Download NCBI metadata and genome assembly data
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- Explicitly defining synonym species
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- Generate GTDB metadata
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- Generate new exception lists
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- Generate Ribosomal Metadata
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- Generating data files for GTDB website
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- GTDB R200
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- GTDB R201
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- GTDB R202
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- GTDB R207
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- GTDB R214
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- GTDB R220
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- GTDB R226
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- GTDB R232
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- GTDB R237
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- GTDB R95
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- GTDB R98
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- Infer and decorate tree for new release
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- Internal GTDB Release Notes
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- Resolving gTranslate and NCBI conflicts
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- Taxonomy
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- Update database metadata
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- Update GTDB taxonomy
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- Update LTP Database
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- Update Silva
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- Updating GTDB species representatives
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- Updating website
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- Useful PostgresQL Commands
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- wget_data.sh
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