Installing GPAT++

git clone --recursive https://github.com/jewmanchue/vcflib.git vcflib

cd vcflib

make

All program can be found in vcflib/bin. An example of running one of the programs:

bin/bFst --help

Keeping update to date:

To update your copy of GPAT just type:

make update

You will be prompted for your github password.

General info:

GPAT++ uses the Erik Garrison's vcflib (git profile) for parsing and indexing VCF files. Many thanks to Erik.