Page Index - xqwen/dap GitHub Wiki

18 page(s) in this GitHub Wiki:

• Home
• Integrative Genetic Association Analysis using TORUS and DAP: A Tutorial
• 1. Overview of Integrative Genetic Association Analysis
• 1.1 Types of Applications
• 1.2 Defining Genomic Loci
• 1.3 Supported Data Structure
• 1.4 Summary Statistics vs. Individual-Level Data
• 2. Case Studies
• 2.1 Enrichment Analysis
• 2.1.1 Enrichment Analysis in cis-eQTL Mapping
• 2.1.2 Enrichment Analysis in GWAS
• 2.2 QTL Discovery
• 2.3 Multi-SNP Fine-mapping
• Case study: enrichment analysis in GWAS
• Case study: enrichment analysis of GEUVADIS cis eQTLs
• Case study: enrichment analysis of GTEx liver cis eQTLs
• Case study: multi SNP fine mapping
• Case study: QTL discovery