Cypher Board V1.0 Pinout Reference

Status: Draft Project: Enigma-NG Author: Izzyonstage & GitHub Copilot Version: v.0.1.0 Associated Hardware Revision: Rev A Last Updated: 2026-10-08

Board_Layout.md is a visualisation-only document. Design narrative, specifications, and component rationale belong in Design_Spec.md. This file contains connector pinout references and board orientation notes only.

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Orientation Convention

• Front face: faces the first Rotor Mini-Stack.
• Back face: carries ENC module mounts (J7–J18), the CTL dock connectors (J1/J2), and the spade blade terminal bank (J20+) along the bottom edge of this face (the HID/USM interconnect connectors, J5/J6, are at the top edge of the same face - general placement only, exact per-terminal arrangement TBD at layout - see DEC-088).
• STA side: the edge where J3 (Stack-Input / STA-side QSS-025 female) is mounted.
• REF side: the edge where J4 (Stack-Output / REF-side QSS-025 female) is mounted.

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1. J1 / J2 — Controller Dock (Power-Only Molex / Signal-Only Samtec)

Connector Definition Owner: Controller/Board_Layout.md §2/§3. J1uses the plug (Molex 2195620015) mating with the CTL receptacle (Molex 2195630015).J2` uses the right-angle male plug (Samtec QTS-025-01-L-D-RA-P) mating with the CTL vertical female receptacle (Samtec QSS-025-01-L-D-A-GP-K). See DEC-098.

J1 — Power-Only Dock (Molex 2195620015)

Zero signal contacts.

Contact type	Allocation	Notes
Power-pitch (5x, big pins)	5 x GND	GND mates first on the larger, more robust contacts
Signal-pitch (8x)	8 x 5V_MAIN	4.5A/contact rating — 36A theoretical capacity
Signal-pitch (7x)	7 x 3V3_ENIG	4.5A/contact rating — 31.5A theoretical capacity

J2 — Signal-Only Dock (Samtec QTS-025-01-L-D-RA-P)

Zero power rails. 50 contacts: 2 center-GND-bar (1/row) + 24 usable pins/row. Pin numbering: column Cn, top pin = 2n-1, bottom pin = 2n. Note: the connector's internal ground wedge runs the full connector length between the top (odd) and bottom (even) pin rows — top/bottom crosstalk within a column is inherently shielded; the exposure to guard against is column-to-column (same-row) adjacency, hence the GND separator columns below. Full pin map matches Controller/Board_Layout.md §3.2 exactly (this board carries the mating plug of the same net map).

Top Row Signal	Top Pin#	Bottom Pin#	Bottom Row Signal
GND	1	2	GND
PWM0[0]	3	4	GND
GND	5	6	PWM0[1]
PWM0[2]	7	8	GND
GND	9	10	PWM0[3]
GND	11	12	GND
GND	13	14	GND
GPCLK[0]	15	16	GPCLK[1]
GND	17	18	GND
GND	19	20	GND
USB_D_PLUS	21	22	USB_D_MINUS
GND	23	24	GND
GND (bar)	25	26	GND (bar)
GND	27	28	GND
GND	29	30	GND
I2C1_SDA (Bank 1, Cypher peripherals — existing)	31	32	I2C1_SCL (Bank 1, existing)
GND	33	34	GND
I2C2_SDA (Bank 2, future — NC)	35	36	I2C2_SCL (Bank 2, future — NC)
GND	37	38	GND
I2C3_SDA (Bank 3, future — NC)	39	40	I2C3_SCL (Bank 3, future — NC)
GND	41	42	GND
I2C4_SDA (Bank 4, future — NC)	43	44	I2C4_SCL (Bank 4, future — NC)
GND	45	46	GND
I2C6_SDA (Bank 6, spare/HID-future — NC)	47	48	I2C6_SCL (Bank 6, spare/HID-future — NC)
GND	49	50	GND

Note: I2C0 (PM-dedicated bus) is not present on this connector — it is routed exclusively via the Controller's J3 to the Power Module. I2C2/I2C3/I2C4/I2C6 are reserved for future expansion (see DEC-099) and are NC on this board; PWM0[0-3] and GPCLK[0]/GPCLK[1] are also reserved and are wired only to the bare test-pad loops (TP1-TP6, each paired with a GND test-pad loop TP7-TP12) defined below — see Design_Spec.md DR-CYP-10.

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2. J3 — Stack-Input / STA-Side Stacking Connector (QSS-025-01-L-D-A-GP-K)

Connector Definition Owner: Stack-Input/Board_Layout.md §1 (per DEC-094 — the IC-STA-CHAIN template is reused identically at every Stack-Input front/rear junction along the chain). This board carries the female receptacle (QSS-025-01-L-D-A-GP-K); Stack-Input's front face carries the mating male QTS-025-01-L-D-RA-P.

Fully 50-pin allocated per DEC-090/DEC-093 — see Stack-Input/Board_Layout.md §1 for the full canonical pin map.

Cypher Board's own wiring at J3: ACTUATE_REQUEST_IN_N (pin 16) → CPLD U1 input, driving first-rotor actuation per U1's programmed configuration (based on ENC_ACTIVE_N from Cypher-Input and U1's firmware, per DEC-091). ACTUATE_REQUEST_OUT_N (pin 35) → CPLD U1 input and R51 (10 kOhm pull-up to 3V3_ENIG, idle-bias) — this is the far-end return of the full round-trip signal path (DEC-093); U1 firmware compares it against the originally-issued ACTUATE_REQUEST_IN_N to verify the request successfully completed its round trip through the entire rotor stack, as a system self-test/diagnostic. The pull-up defines the idle/disconnected state (e.g. Stack-Blanking Board plugged directly into J3/J4 for bench testing with no mini-stacks attached, where nothing actively drives this pin). See DEC-090, DEC-091, DEC-093, DEC-094, DEC-097.

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3. J4 — Stack-Output / REF-Side Stacking Connector (QSS-025-01-L-D-A-GP-K)

Connector Definition Owner: Stack-Output/Board_Layout.md §1 (per DEC-094 — the IC-REF-CHAIN template is reused identically at every Stack-Output front/rear junction along the chain). This board carries the female receptacle (QSS-025-01-L-D-A-GP-K); Stack-Output's front face carries the mating male QTS-025-01-L-D-RA-P.

Fully 50-pin allocated per DEC-092/DEC-093 — see Stack-Output/Board_Layout.md §1 for the full canonical pin map.

Cypher Board's own wiring at J4: TTD_RETURN (pin 30) mirrors TTD's position on J3 (pin 30) — routed via R50 (22 Ohm) to FT232H U17 TDO, per §4 Signal Turnaround. 3V3_ENIG (8 pins total, matching J3's power pin count on this single-rail connector) feeds the Stack-Output Board, which requires no 5V_MAIN (per Stack-Output/Design_Spec.md DR-SOUT-07). ACTUATE_REQUEST_REF_IN_N/ACTUATE_REQUEST_REF_OUT_N are logically distinct nets from J3's ACTUATE_REQUEST_IN_N/ACTUATE_REQUEST_OUT_N (same pin positions, per the board-agnostic template, but different roles — matching the existing ENC_IN_REF/ENC_OUT_REF vs ENC_IN_ROT/ENC_OUT_ROT naming precedent). ACTUATE_REQUEST_REF_IN_N (pin 16) → CPLD U1 input; based on U1's firmware configuration, U1 drives ACTUATE_REQUEST_REF_OUT_N (pin 35) in response. See DEC-093 for the full end-to-end ACTUATE_REQUEST signal path.

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4. J5 — Cypher Left Pair Template (Cypher-Input / Cypher-Output HID Interconnect)

Connector Definition Owner: this board. Mates with whichever HID board's top (right-angle male, QTS-025-01-L-D-RA-P) connector is physically closest - the other HID board attaches further down the local stack via that board's own bottom connector, not directly to this board. Mating gap/tolerance: design/Standards/Global_Routing_Spec.md §4.1a.

• MPN: QSS-025-01-L-D-A-GP-K (Samtec 50-contact 0.635mm vertical female SMT)
• Carries 3V3_ENIG/5V_MAIN/GND, ENC_DATA_IN[5:0]/ENC_DATA_OUT[5:0], ENC_ACTIVE_INPUT_N/ENC_ACTIVE_OUTPUT_N, and BOARD_ROLE_ID_IN[3:0]/BOARD_ROLE_ID_OUT[3:0]. The physical plugboard patch-jack harness does not route through this connector either - it wires directly to this board's own spade terminal bank (J20+) instead, per DEC-088.

J5 — Full Pin Map (Cypher Left Pair Template)

50 contacts: 2 center-GND-bar (1/row) + 24 usable pins/row. Pin numbering: column Cn, top pin = 2n-1, bottom pin = 2n. This is a board-agnostic template — how each specific board (Cypher-Input, Cypher-Output) wires a given pin internally is defined in that board's own Design_Spec.md.

Top Row Signal	Top Row Pin#	Bottom Row Pin#	Bottom Row Signal
3V3_ENIG	1	2	3V3_ENIG
5V_MAIN	3	4	5V_MAIN
GND	5	6	GND
GND	7	8	ENC_DATA_OUT[0]
GND	9	10	ENC_DATA_OUT[1]
GND	11	12	ENC_DATA_OUT[2]
GND	13	14	ENC_DATA_OUT[3]
GND	15	16	ENC_DATA_OUT[4]
BOARD_ROLE_ID_IN[0]	17	18	ENC_DATA_OUT[5]
BOARD_ROLE_ID_IN[1]	19	20	ENC_ACTIVE_OUTPUT_N
BOARD_ROLE_ID_IN[2]	21	22	GND
BOARD_ROLE_ID_IN[3]	23	24	GND
GND (bar)	25	26	GND (bar)
GND	27	28	BOARD_ROLE_ID_OUT[3]
GND	29	30	BOARD_ROLE_ID_OUT[2]
ENC_ACTIVE_INPUT_N	31	32	BOARD_ROLE_ID_OUT[1]
ENC_DATA_IN[5]	33	34	BOARD_ROLE_ID_OUT[0]
ENC_DATA_IN[4]	35	36	GND
ENC_DATA_IN[3]	37	38	GND
ENC_DATA_IN[2]	39	40	GND
ENC_DATA_IN[1]	41	42	GND
ENC_DATA_IN[0]	43	44	GND
GND	45	46	GND
5V_MAIN	47	48	5V_MAIN
3V3_ENIG	49	50	3V3_ENIG

Rotational (180°) symmetry: this pin map is a point-symmetric pattern about the center GND bar (column 13, pins 25/26) - rotating the connector 180° maps every populated pin onto its counterpart at the mirrored column/row (column n maps to column 26-n, row flips). 3V3_ENIG (column 1, both rows) opposes itself at column 25 (both rows); 5V_MAIN (column 2, both rows) opposes itself at column 24 (both rows) - each rail is trivially symmetric, occupying a full mirrored column pair on its own. Columns 9/17 and 10/16 each pack two independent signal pairs onto the same column pair (one ENC_DATA_IN/ENC_DATA_OUT bit plus one BOARD_ROLE_ID_IN/ BOARD_ROLE_ID_OUT bit, or one BOARD_ROLE_ID_IN/BOARD_ROLE_ID_OUT bit plus ENC_ACTIVE_INPUT_N/ENC_ACTIVE_OUTPUT_N), since no GND filler is needed once both cells of a mirrored pair carry real signals. Every other populated column carries one _IN/_OUT signal on one row with GND as its silent-partner row; its mirrored column carries the paired signal (same bit index, _IN↔_OUT) on the opposite row, with GND again filling the complementary slot - e.g. ENC_DATA_OUT[0] (column 4, bottom) diagonally opposes ENC_DATA_IN[0] (column 22, top); BOARD_ROLE_ID_IN[2] (column 11, top) diagonally opposes BOARD_ROLE_ID_OUT[2] (column 15, bottom).

Power/GND pin budget: 3V3_ENIG and 5V_MAIN each occupy 4 pins (one full mirrored column pair per rail).

ENC_DATA_IN[5:0]/ENC_DATA_OUT[5:0] (columns 4-9, 17-22): top row (columns 17-22) = KBD_ENC keyboard encode data, generated by Cypher-Input, relayed through whichever HID board is closest if that is Cypher-Output; bottom row (columns 4-9) = LBD_DEC lightboard decode data, generated by this board's own CPLD (U1) and relayed onward to Cypher-Output. See Design_Spec.md §3 CPLD Signal Routing Matrix.

ENC_ACTIVE_INPUT_N/ENC_ACTIVE_OUTPUT_N (column 16 top / column 10 bottom): ENC_ACTIVE_INPUT_N (column 16, top row) is generated by Cypher-Input and terminates at this board only - it is never tapped or relayed further by any intermediate HID board. ENC_ACTIVE_OUTPUT_N (column 10, bottom row) is a separate signal generated by this board's own CPLD firmware (after accounting for the cipher pipeline's propagation delay), for Cypher-Output to consume as its own legitimate destination - see Design_Spec.md §3 CPLD Signal Routing Matrix and External Keyboard Source Mux.

BOARD_ROLE_ID_IN[3:0]/BOARD_ROLE_ID_OUT[3:0] (columns 9-12, 14-17): BOARD_ROLE_ID_IN[3:0] is Cypher-Input's own ID, driven on the top row; BOARD_ROLE_ID_OUT[3:0] is Cypher-Output's own ID, driven on the bottom row - fixed by each board's own passthrough wiring convention, regardless of physical stacking order (see Design_Spec.md §3a). As a permanently-tied hardware identification strap (not a dynamic/switching signal), no additional GND shielding is required beyond the fixed center bar. Capability bit encoding (ID[3]:ID[2]:ID[1]:ID[0], shared meaning on both Input and Output IDs):

Bit	Meaning
0	Characters (A-Z letters)
1	Numbers (0-9 digits)
2	Special (symbols, e.g. base64-extra +//)
3	Custom (board declares support for a non-standard capability combination)

Known values: 26-Char Classic = 0b0001; 10-Numeric = 0b0010; 64-Character (default) = 0b0111; 64-Character (custom-support enabled via user-accessible switch) = 0b1111. See Design_Spec.md §3a for the full compatibility rule and HID_VARIANT_ID[3:0] comparator output.

Cypher Board's own wiring at J5

Pin(s)	Wiring
Top row (43,41,39,37,35,33) — ENC_DATA_IN[5:0]	→ CPLD U1 ENC_IN_KBD[5:0] (per Design_Spec.md §3 Port Mapping, KBD_ENC role)
Bottom row (8,10,12,14,16,18) — ENC_DATA_OUT[5:0]	← CPLD U1 ENC_OUT_LBD[5:0] (per Design_Spec.md §3 Port Mapping, LBD_DEC role)
31 — ENC_ACTIVE_INPUT_N	→ external keyboard source mux (U4/U5), per Design_Spec.md §3
20 — ENC_ACTIVE_OUTPUT_N	← driven by this board, after the mux's selected activity state passes through CPLD firmware's propagation-delay accounting (see Design_Spec.md §3 External Keyboard Source Mux)
17,19,21,23 (top row) — BOARD_ROLE_ID_IN[3:0]	→ CPLD U1 compatibility comparator input
34,32,30,28 (bottom row) — BOARD_ROLE_ID_OUT[3:0]	→ CPLD U1 compatibility comparator input
1, 2 — 3V3_ENIG; 3, 4 — 5V_MAIN (also 49/50, 47/48)	Board power entry/distribution

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5. J6 — User Settings Module Hub Connector

Connector Definition Owner: User_Settings_Module/Board_Layout.md §2 (its own J1). Full 50-pin template defined there — this section only records this board's own local wiring so it cannot drift out of sync with the owning definition.

• MPN: QSS-025-01-L-D-A-GP-K (Samtec 50-contact 0.635mm vertical female SMT)
• Mates USM's own top (right-angle male, QTS-025-01-L-D-RA-P) Hub connector. Mating gap/tolerance: design/Standards/Global_Routing_Spec.md §4.1a.

This board drives / uses the Hub Connector Template as the chain's root (the J1 end, in USM's own naming):

Pins	Wiring
TDI	← driven from FT232H (U17) MPSSE TDI (AD1); this is the system JTAG chain's entry point
TDO	→ received here (whichever HID board is Output-role, relayed back through USM) and forwarded to Mount1 (first Plugboard Encoder Module, J8) TDI
TMS/TCK/CPLD_RESET_N	Broadcast from the JTAG Hub (see Design_Spec.md §3 JTAG Hub)
I2C_SDA/I2C_SCL	Dedicated Cypher-peripherals I2C bus (distinct from I2C1 - shared only with USM, the HID boards, and Cypher-Plugboard)
3V3_ENIG, GND	Board power entry/distribution

Chain order (see Design_Spec.md §3 JTAG Hub for full derivation): FT232H (U17) → J6 TDI → User Settings Module → whichever HID board is Input-role (Cypher-Input CPLD) → whichever HID board is Output-role (Cypher-Output CPLD) → USM → J6 TDO → Mount1 → Mount2 → Mount3 → Mount4 → U1 (this board's own CPLD) → J3 → 30x Rotor CPLDs → J4 TTD_RETURN → R50 → U17 TDO. All "static" CPLDs (Cypher-Input, Cypher-Output, 4x Plugboard Encoder Modules, this board's own U1) precede the "dynamic" Rotor stack in the chain. The Cypher-Input/Cypher-Output sub-chain hop is realised entirely within the User Settings Module and the two HID boards' own wiring, not on this board's own copper - see User_Settings_Module/Design_Spec.md §4.

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6. J7–J18 — ENC Module Mounts (back face)

Connector Definition Owner: Encoder_Module/Board_Layout.md §1a-1c. This board carries only the mating DF40C-xDS receptacles; the ENC module owns the DF40C-xDP plug pin-mapping standard.

Four Hirose DF40C-xDS receptacle sets. Each mount:

Position	Connector	MPN	Pins	Role
A (left)	J7 / J10 / J13 / J16	DF40C-90DS-0.4V(51)	90	plain-bits[63:0]
B (centre)	J8 / J11 / J14 / J17	DF40C-24DS-0.4V(51)	24	cypher-bits + JTAG + ENC_ACTIVE_N
C (right)	J9 / J12 / J15 / J18	DF40C-10DS-0.4V(51)	10	3V3_ENIG power

Pin assignments per connector follow the ENC Module Interface definition in Encoder_Module/Board_Layout.md §1a-1c (reproduced for layout reference in Design_Spec.md §6 J7–J18; in case of conflict, the Encoder Module definition is authoritative).

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7. J20+ — Spade Blade Terminal Bank (back face, bottom edge)

64 Keystone 1285-ST spade blade terminals required per ENC module mount position (4 mounts = 256 terminals total). Full component details and RefDes allocation: see Design_Spec.md §6 J20+ and §11 BOM. General location is the bottom edge of the back face (HID interconnect connectors J5/J6 are at the top edge of the same face); exact per-terminal arrangement within that region is TBD at schematic/layout time. Wired via external spade-to-spade jumper cables directly to the physical plugboard patch jacks, which are mounted (mechanically only, no electrical connection) on the Plugboard board - see DEC-088.

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8. TP1–TP12 — PWM/GPCLK Test Pad Loops (back face)

Bare copper test-pad loops (no component, no BOM entry) receiving the reserved PWM0[0-3] and GPCLK[0]/GPCLK[1] signals from Controller J2 (see §1). Each signal pad is paired with an adjacent GND test-pad loop for convenient scope/multimeter probing. No active devices are populated; see Design_Spec.md DR-CYP-10.

RefDes	Signal	Paired GND RefDes
TP1	PWM0[0]	TP7
TP2	PWM0[1]	TP8
TP3	PWM0[2]	TP9
TP4	PWM0[3]	TP10
TP5	GPCLK[0]	TP11
TP6	GPCLK[1]	TP12

Exact physical placement is TBD at schematic/layout time; general location is the back face, away from the high-speed JTAG/ENC signal routing at J3/J4.

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Diagram Reference

See design/Diagrams/cypher-system-layout.drawio and renders in design/Diagrams/renders/ for the system-level layout diagram showing the Cypher Board's position within the Rotor Mini-Stack assembly.