Page Index - tannerjared/MRI_Guide GitHub Wiki
43 page(s) in this GitHub Wiki:
- Home
- Before You Begin
- macOS
- XQuartz
- XCode Command Line Tools
- Git
- Text/Code Editor
- Pip
- Homebrew
- Linux
- Git
- Pip
- NeuroDebian repositories
- Windows 10
- Notes Regarding Windows
- Recommended MRI and Useful Software
- ANTs
- Bias Field Correction
- BIDS Format
- Building Apptainer Containers on a HPC
- Command Line Introduction
- Common MRI Sequences
- Converting Dicom to NIfTI
- dwifslpreproc
- fMRIPrep on HiPerGator
- Freesurfer 7 Installation
- FreeSurfer 7 Suggested Processing
- FreeSurfer GLM Tutorial
- FreeSurfer Run with QC
- Freewater Analysis
- Install Git
- Introduction to Bash scripting for Neuroimaging
- Introduction to the Command Line
- Introduction to the Command Line and Bash
- ITK SNAP
- Loading FreeSurfer Images for QA on HiPerGator
- MRI Analysis Tools
- MRI File Formats
- preprocessing_antscorticalthickness
- Rotating bvecs
- UF HiPerGator GUI
- Violin Plots in Python
- Windows Subsystem for Linux