How to install the Fiji Tools for HCS in Fiji - stoeter/Fiji-Tools-for-HCS GitHub Wiki

Installation guide for Fiji-Tools-for-HCS

  • there was an old and discontinued collection of macros called "TDS macros" on the TDS update site
  • the new collection was rename to "Fiji-Tools-for-HCS" and contains all macros from previous collection
  • "Fiji-Tools-for-HCS" is devided into several application fields like Automated Microscope Tool, File Conversion, Fish Embryo Screen...
  • the old "TDS macros" still can be found on the Fiji update site

Installation


  • Download the latest version of Fiji and install it on your computer.
  • Add the update site for Fiji-Tools-for-HCS. There is an easy (1.) and a manual (2.) way to do it:


  1. ) general description on how to add update sites on Fiji website, then just check the TDS update site in the Fiji updater... see above.
  2. ) How to add update site manually in Fiji? How to upload own macro/plugin to Tools-for-HCS update site? You will find (old instruction page) with more details or mail to stoeter for more details...

Usage

  • Select under Fiji the plugins menue
  • Go all the way down the list to find Fiji-Tools-for-HCS in different catagories
  • Select the macro to run and follow the instructions or the macro help page in this Wiki
  • The macros are automatically updated with your Fiji updater
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