Page Index - rrwick/Autocycler GitHub Wiki

62 page(s) in this GitHub Wiki:

• Home
• The problem
• The solution
• An important requirement
• Where to begin?
• Citation
• Autocycler clean
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• Autocycler cluster
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• Autocycler combine
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• Autocycler compress
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• Autocycler decompress
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• Autocycler dotplot
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• Autocycler gfa2fasta
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• Autocycler helper
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• Autocycler resolve
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• Autocycler subsample
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• Autocycler table
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• Autocycler trim
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• Demo dataset
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• FAQ and miscellaneous tips
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• Fully automated assembly
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• Generating input assemblies
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• Genome size estimation
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• Glossary
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• How to assess an Autocycler assembly
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• Illustrated pipeline overview
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• Influencing Autocycler via contig headers
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• Linear sequences
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• Manually curated assembly
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• Metrics
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• Parallelising input assemblies
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• Reorienting with Dnaapler
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• Software requirements and installation
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• Troubleshooting problems
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