Page Index - rrwick/Autocycler GitHub Wiki
32 page(s) in this GitHub Wiki:
- Home
- The problem
- The solution
- An important requirement
- Where to begin?
- Autocycler clean
- Autocycler cluster
- Autocycler combine
- Autocycler compress
- Autocycler decompress
- Autocycler dotplot
- Autocycler gfa2fasta
- Autocycler resolve
- Autocycler subsample
- Autocycler table
- Autocycler trim
- Demo dataset
- FAQ and miscellaneous tips
- Fully automated assembly
- Generating input assemblies
- Genome size estimation
- Glossary
- How to assess an Autocycler assembly
- Illustrated pipeline overview
- Influencing Autocycler via contig headers
- Linear sequences
- Manually curated assembly
- Metrics
- Parallelising input assemblies
- Reorienting with Dnaapler
- Software requirements and installation
- Troubleshooting problems