Page Index - picrust/picrust2 GitHub Wiki
48 page(s) in this GitHub Wiki:
- Home
- Getting help with PICRUSt2
- PICRUSt2
- PICRUSt2 Flowchart
- PICRUSt2 database
- Citations
- For phylogenetic placement of reads:
- For hidden state prediction:
- For pathway inference:
- Add descriptions
- Combine files from Hidden State Prediction PICRUSt2‐SC database
- Creating a custom trait table
- Frequently Asked Questions
- Full pipeline script
- Generating shuffled predictions
- Get the best domain for each sequence PICRUSt2‐SC database
- Hidden state prediction
- How does PICRUSt2 work? What does it do?
- Infer pathway abundances
- Installation
- Key Limitations
- Major Bug Reports and Announcements
- Manually install QIIME 2 plugin
- Metagenome prediction
- PICRUSt2 Streamlined Tutorial (v2.1.3 beta)
- PICRUSt2 Streamlined Tutorial (v2.1.4 beta)
- PICRUSt2 Tutorial (San Juan, April 2019)
- PICRUSt2 Tutorial (v2.1.3 beta)
- PICRUSt2 Tutorial (v2.1.4 beta)
- PICRUSt2 Tutorial (v2.2.0 beta)
- PICRUSt2 Tutorial (v2.3.0 beta)
- PICRUSt2 Tutorial (v2.4.2)
- PICRUSt2 Tutorial (v2.5.0)
- PICRUSt2 Tutorial (v2.5.2)
- PICRUSt2 Tutorials
- PICRUSt2‐SC database
- Pre requisite installations
- q2 picrust2 Tutorial
- Quickstart
- Sequence placement
- STAMP example
- Standard PICRUSt2 output
- Swapping in SEPP for read placement with q2 picrust2
- Testing the updated PICRUSt2 database
- Updating the PICRUSt2 database
- Validation with paired metagenomes
- Workflow
- Workflow PICRUSt2‐SC database