Page Index - picrust/picrust2 GitHub Wiki
87 page(s) in this GitHub Wiki:
- Home
- Getting help with PICRUSt2
- PICRUSt2
- PICRUSt2 Flowchart
- PICRUSt2 database
- Citations
- For phylogenetic placement of reads:
- For hidden state prediction:
- For pathway inference:
- Add descriptions
- Please reload this page
- Combine files from Hidden State Prediction PICRUSt2‐SC database
- Please reload this page
- Creating a custom trait table
- Please reload this page
- Frequently Asked Questions
- Please reload this page
- Full pipeline script
- Please reload this page
- Generating shuffled predictions
- Please reload this page
- Get the best domain for each sequence PICRUSt2‐SC database
- Please reload this page
- Hidden state prediction
- Please reload this page
- How does PICRUSt2 work? What does it do?
- Please reload this page
- Infer pathway abundances
- Please reload this page
- Installation
- Please reload this page
- Key Limitations
- Please reload this page
- Major Bug Reports and Announcements
- Please reload this page
- Manually install QIIME 2 plugin
- Please reload this page
- Metagenome prediction
- Please reload this page
- PICRUSt2 Streamlined Tutorial (v2.1.3 beta)
- Please reload this page
- PICRUSt2 Streamlined Tutorial (v2.1.4 beta)
- Please reload this page
- PICRUSt2 Tutorial (San Juan, April 2019)
- Please reload this page
- PICRUSt2 Tutorial (v2.1.3 beta)
- Please reload this page
- PICRUSt2 Tutorial (v2.1.4 beta)
- Please reload this page
- PICRUSt2 Tutorial (v2.2.0 beta)
- Please reload this page
- PICRUSt2 Tutorial (v2.3.0 beta)
- Please reload this page
- PICRUSt2 Tutorial (v2.4.2)
- Please reload this page
- PICRUSt2 Tutorial (v2.5.0)
- Please reload this page
- PICRUSt2 Tutorial (v2.5.2)
- Please reload this page
- PICRUSt2 Tutorials
- Please reload this page
- PICRUSt2‐SC database
- Please reload this page
- Pre requisite installations
- Please reload this page
- q2 picrust2 Tutorial
- Please reload this page
- Quickstart
- Please reload this page
- Sequence placement
- Please reload this page
- STAMP example
- Please reload this page
- Standard PICRUSt2 output
- Please reload this page
- Swapping in SEPP for read placement with q2 picrust2
- Please reload this page
- Testing the updated PICRUSt2 database
- Please reload this page
- Updating the PICRUSt2 database
- Please reload this page
- Validation with paired metagenomes
- Please reload this page
- Workflow
- Please reload this page
- Workflow PICRUSt2‐SC database
- Please reload this page