Page Index - picrust/picrust2 GitHub Wiki

87 page(s) in this GitHub Wiki:

• Home
• Getting help with PICRUSt2
• PICRUSt2
• PICRUSt2 Flowchart
• PICRUSt2 database
• Citations
• For phylogenetic placement of reads:
• For hidden state prediction:
• For pathway inference:
• Add descriptions
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• Combine files from Hidden State Prediction PICRUSt2‐SC database
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• Creating a custom trait table
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• Frequently Asked Questions
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• Full pipeline script
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• Generating shuffled predictions
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• Get the best domain for each sequence PICRUSt2‐SC database
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• Hidden state prediction
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• How does PICRUSt2 work? What does it do?
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• Infer pathway abundances
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• Installation
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• Key Limitations
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• Major Bug Reports and Announcements
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• Manually install QIIME 2 plugin
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• Metagenome prediction
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• PICRUSt2 Streamlined Tutorial (v2.1.3 beta)
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• PICRUSt2 Streamlined Tutorial (v2.1.4 beta)
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• PICRUSt2 Tutorial (San Juan, April 2019)
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• PICRUSt2 Tutorial (v2.1.3 beta)
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• PICRUSt2 Tutorial (v2.1.4 beta)
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• PICRUSt2 Tutorial (v2.2.0 beta)
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• PICRUSt2 Tutorial (v2.3.0 beta)
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• PICRUSt2 Tutorial (v2.4.2)
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• PICRUSt2 Tutorial (v2.5.0)
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• PICRUSt2 Tutorial (v2.5.2)
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• PICRUSt2 Tutorials
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• PICRUSt2‐SC database
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• Pre requisite installations
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• q2 picrust2 Tutorial
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• Quickstart
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• Sequence placement
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• STAMP example
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• Standard PICRUSt2 output
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• Swapping in SEPP for read placement with q2 picrust2
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• Testing the updated PICRUSt2 database
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• Updating the PICRUSt2 database
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• Validation with paired metagenomes
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• Workflow
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• Workflow PICRUSt2‐SC database
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