REFERENCES - patrick-douglas/Seqs-Extractor GitHub Wiki

BLAST+

  1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990). Basic local alignment search tool. Journal of molecular biology, 215(3), 403-410.

SAMTOOLS

  1. Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., ... & Durbin, R. (2009). The sequence alignment/map format and SAMtools. Bioinformatics, 25(16), 2078-2079.

MISA

  1. Thiel, T. (2003). MISA—Microsatellite identification tool. Website http://pgrc. ipk-gatersleben. de/misa/[accessed 17 June 2016].

UniProt

  1. Consortium, U. (2008). The universal protein resource UniProt. Nucleic acids research, 36, (suppl 1):D190-D195

Trinity

  1. Grabherr, M. G., Haas, B. J., Yassour, M., Levin, J. Z., Thompson, D. A., Amit, I., ... & Chen, Z. (2011). Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data. Nature biotechnology, 29(7), 644.