test_with_bib - morinlab/LLMPP GitHub Wiki
| Gene | Reference |
|---|---|
| ABL2 | (Russler-Germain et al. 2023) |
| HIST1H2BD | (Krysiak et al. 2017) |
| CPNE8 | (Hübschmann et al. 2021) |
| HIST1H2AG | (Krysiak et al. 2017) |
| BIRC6 | |
| CXCR4 | (Krysiak et al. 2017) |
| STAT6 | (Yildiz et al. 2015) |
| CARD11 | (Morin et al. 2011) |
| ITPKB | |
| ACTG1 | (Hübschmann et al. 2021) |
| HIST1H2BC | (Krysiak et al. 2017) |
| POU2AF1 | (Krysiak et al. 2017) |
| SESN1 | |
| CILP | (Russler-Germain et al. 2023) |
| MEF2C | |
| PRKDC | (Hübschmann et al. 2021) |
| TP53 | (Morin et al. 2011) |
| KLF2 | |
| MYCBP2 | (Hübschmann et al. 2021) |
| BCL7A | (Krysiak et al. 2017) |
| B2M | (Morin et al. 2011) |
| VMA21 | (Hübschmann et al. 2021) |
| BCL10 | (Russler-Germain et al. 2023) |
| DUSP2 | |
| MAP2K1 | (Louissaint et al. 2016) |
| IGLL5 | (Russler-Germain et al. 2023) |
| ZC3H12A | |
| JUP | (Hübschmann et al. 2021) |
| TMEM30A | (Morin et al. 2011) |
| ATP6V1B2 | (Okosun et al. 2016) |
| SOCS1 | |
| CYP2A6 | (Russler-Germain et al. 2023) |
| HIST1H3B | |
| SRRM2 | (Russler-Germain et al. 2023) |
| HIST1H3G | (Krysiak et al. 2017) |
| HIST1H2AM | (Krysiak et al. 2017) |
| GNA13 | (Morin et al. 2011) |
| HIST1H1B | (Krysiak et al. 2017) |
| PPP4C | (Hübschmann et al. 2021) |
| MYD88 | |
| PTPRD | |
| EEF1A1 | (Hübschmann et al. 2021) |
| CCND3 | (Morin et al. 2011) |
| LAPTM5 | (Hübschmann et al. 2021) |
| TNFAIP3 | |
| HIST1H1C | (Morin et al. 2011) |
| GBP7 | (Russler-Germain et al. 2023) |
| XIRP2 | (Russler-Germain et al. 2023) |
| GRM6 | (Russler-Germain et al. 2023) |
| CREBBP | (Pasqualucci et al. 2011) |
| SGK1 | (Morin et al. 2011) |
| CD79B | |
| ATP6AP1 | (Okosun et al. 2016) |
| HNRNPD | |
| OR8H2 | (Russler-Germain et al. 2023) |
| IRF8 | (Morin et al. 2011) |
| ZNF608 | (Krysiak et al. 2017) |
| SHROOM3 | (Russler-Germain et al. 2023) |
| HVCN1 | (Krysiak et al. 2017) |
| TBL1XR1 | |
| CD83 | (Russler-Germain et al. 2023) |
| DTX1 | |
| KLHL6 | (Morin et al. 2011) |
| EBF1 | |
| CD70 | (Russler-Germain et al. 2023) |
| IRF4 | |
| STAB2 | (Russler-Germain et al. 2023) |
| TNFRSF14 | (Cheung et al. 2010) |
| FAS | |
| BTK | (Krysiak et al. 2017) |
| FOXO1 | (Morin et al. 2011) |
| SMARCA4 | (Krysiak et al. 2017) |
| POU2F2 | (Krysiak et al. 2017) |
| RRAGC | |
| KIR3DL1 | (Russler-Germain et al. 2023) |
| HIST1H1D | (Krysiak et al. 2017) |
| BCL2 | (Morin et al. 2011) |
| EGR1 | (Krysiak et al. 2017) |
| ACTB | |
| PZP | (Russler-Germain et al. 2023) |
| GNAI2 | |
| DHX15 | (Hübschmann et al. 2021) |
| ATP6V1A | (Hübschmann et al. 2021) |
| PDS5B | (Hübschmann et al. 2021) |
| BCL6 | |
| HIST1H2BM | (Krysiak et al. 2017) |
| PIM1 | |
| MEF2B | (Morin et al. 2011) |
| EZH2 | (Morin et al. 2010) |
| MAGEC1 | (Russler-Germain et al. 2023) |
| KMT2D | (Morin et al. 2011) |
| ARID1A | (Krysiak et al. 2017) |
| MAP7D1 | (Russler-Germain et al. 2023) |
| DDX3X | |
| MGEA5 | (Hübschmann et al. 2021) |
| MKI67 | (Russler-Germain et al. 2023) |
| HIST1H3I | (Krysiak et al. 2017) |
| CCDC42BPB | (Hübschmann et al. 2021) |
| HIST1H1E | (Krysiak et al. 2017) |
| TMSB4X | |
| TPP1 | (Hübschmann et al. 2021) |
| HLA-B | |
| PCLO | |
| FZR1 | (Hübschmann et al. 2021) |
| S1PR2 | |
| BTG1 | |
| BTG2 | (Morin et al. 2011) |
| HIST1H2BG | (Krysiak et al. 2017) |
| LTB | |
| EP300 | (Pasqualucci et al. 2011) |
| CTSS | (Bararia et al. 2020) |
| HIST1H2AC | (Krysiak et al. 2017) |
| NFKBIA | (Russler-Germain et al. 2023) |
| P2RY8 | |
| RBM6 | (Hübschmann et al. 2021) |
| MYC |
Bararia, Deepak, Johannes A. Hildebrand, Sebastian Stolz, Sarah Haebe, Stefan Alig, Christopher P. Trevisani, Francisco Osorio-Barrios, et al. 2020. “Cathepsin S Alterations Induce a Tumor-Promoting Immune Microenvironment in Follicular Lymphoma.” Cell Reports 31 (5): 107522. https://doi.org/10.1016/j.celrep.2020.107522.
Cheung, K.-John J., Nathalie A. Johnson, Joslynn G. Affleck, Tesa Severson, Christian Steidl, Susana Ben-Neriah, Jacqueline Schein, et al. 2010. “Acquired TNFRSF14 Mutations in Follicular Lymphoma Are Associated with Worse Prognosis.” Cancer Research 70 (22): 9166–74. https://doi.org/10.1158/0008-5472.CAN-10-2460.
Hübschmann, Daniel, Kortine Kleinheinz, Rabea Wagener, Stephan H. Bernhart, Cristina López, Umut H. Toprak, Stephanie Sungalee, et al. 2021. “Mutational Mechanisms Shaping the Coding and Noncoding Genome of Germinal Center Derived B-cell Lymphomas.” Leukemia 35 (7): 2002–16. https://doi.org/10.1038/s41375-021-01251-z.
Krysiak, Kilannin, Felicia Gomez, Brian S. White, Matthew Matlock, Christopher A. Miller, Lee Trani, Catrina C. Fronick, et al. 2017. “Recurrent Somatic Mutations Affecting B-cell Receptor Signaling Pathway Genes in Follicular Lymphoma.” Blood 129 (4): 473–83. https://doi.org/10.1182/blood-2016-07-729954.
Louissaint, Abner, Kristian T. Schafernak, Julia T. Geyer, Alexandra E. Kovach, Mahmoud Ghandi, Dita Gratzinger, Christine G. Roth, et al. 2016. “Pediatric-Type Nodal Follicular Lymphoma: A Biologically Distinct Lymphoma with Frequent MAPK Pathway Mutations.” Blood 128 (8): 1093–1100. https://doi.org/10.1182/blood-2015-12-682591.
Morin, Ryan D., Nathalie A. Johnson, Tesa M. Severson, Andrew J. Mungall, Jianghong An, Rodrigo Goya, Jessica E. Paul, et al. 2010. “Somatic Mutations Altering EZH2 (Tyr641) in Follicular and Diffuse Large B-cell Lymphomas of Germinal-Center Origin.” Nature Genetics 42 (2): 181–85. https://doi.org/10.1038/ng.518.
Morin, Ryan D., Maria Mendez-Lago, Andrew J. Mungall, Rodrigo Goya, Karen L. Mungall, Richard D. Corbett, Nathalie A. Johnson, et al. 2011. “Frequent Mutation of Histone-Modifying Genes in Non-Hodgkin Lymphoma.” Nature 476 (7360): 298–303. https://doi.org/10.1038/nature10351.
Okosun, Jessica, Rachel L. Wolfson, Jun Wang, Shamzah Araf, Lucy Wilkins, Brian M. Castellano, Leire Escudero-Ibarz, et al. 2016. “Recurrent mTORC1-activating RRAGC Mutations in Follicular Lymphoma.” Nature Genetics 48 (2): 183–88. https://doi.org/10.1038/ng.3473.
Pasqualucci, Laura, David Dominguez-Sola, Annalisa Chiarenza, Giulia Fabbri, Adina Grunn, Vladimir Trifonov, Lawryn H. Kasper, et al. 2011. “Inactivating Mutations of Acetyltransferase Genes in B-cell Lymphoma.” Nature 471 (7337): 189–95. https://doi.org/10.1038/nature09730.
Russler-Germain, David A., Kilannin Krysiak, Cody A. Ramirez, Matthew Mosior, Marcus P. Watkins, Felicia Gomez, Zachary L. Skidmore, et al. 2023. “Mutations Associated with Progression in Follicular Lymphoma Predict Inferior Outcomes at Diagnosis: Alliance A151303.” Blood Advances 7: 5524–39. https://doi.org/10.1182/bloodadvances.2023010779.
Yildiz, Mehmet, Hongxiu Li, Denzil Bernard, Nisar A. Amin, Peter Ouillette, Siân Jones, Kamlai Saiya-Cork, et al. 2015. “Activating STAT6 Mutations in Follicular Lymphoma.” Blood 125 (4): 668–79. https://doi.org/10.1182/blood-2014-06-582650.
