papers - morinlab/LLMPP GitHub Wiki

title: 'Studies' bibliography: 'morinlab.bib'

Year Focus Sequencing Method Novel genes Tier 1 (%) Example gene Study
1992 BL Sanger 1 1 (100.0) MYC @johnstonCmycHypermutationBurkitt1992
1992 DLBCL Sanger 1 1 (100.0) BCL2 @tanakaFrequentIncidenceSomatic1992
2001 DLBCL Sanger 4 2 (50.0) MYC @pasqualucciHypermutationMultipleProtooncogenes2001a
2004 BL Sanger 1 1 (100.0) TP53 @wildaInactivationARFMDM2p53Pathway2004
2006 DLBCL Sanger 1 1 (100.0) PRDM1 @pasqualucciInactivationPRDM1BLIMP12006a
2006 PMBL Sanger 2 1 (50.0) GPR126 @wenigerMutationsTumorSuppressor2006a
2007 DLBCL Sanger 1 1 (100.0) FAS @schollMutationsRegionFAS2007
2008 DLBCL Sanger 1 1 (100.0) CARD11 @lenzOncogenicCARD11Mutations2008
2009 DLBCL Sanger 1 1 (100.0) NFKBIA @lakeMutationsNFKBIAEncoding2009
2009 DLBCL Sanger 1 1 (100.0) TNFAIP3 @compagnoMutationsMultipleGenes2009a
2009 PMBL Sanger 1 1 (100.0) STAT6 @ritzRecurrentMutationsSTAT62009a
2009 PMBL Sanger 1 1 (100.0) TNFAIP3 @schmitzTNFAIP3A20Tumor2009a
2010 FL Sanger 1 1 (100.0) TNFRSF14 @cheungAcquiredTNFRSF14Mutations2010a
2010 DLBCL RNA-seq/WGS 1 1 (100.0) EZH2 @morinSomaticMutationsAltering2010a
2011 DLBCL RNA-seq/WGS 29 27 (93.1) B2M @morinFrequentMutationHistonemodifying2011
2011 DLBCL exome 7 3 (42.9) CD36 @pasqualucciAnalysisCodingGenome2011
2011 DLBCL Sanger 1 1 (100.0) MYD88 @ngoOncogenicallyActiveMYD882011a
2011 FL exome 2 2 (100.0) CREBBP @pasqualucciInactivatingMutationsAcetyltransferase2011a
2011 DLBCL exome/Sanger 1 1 (100.0) BRAF @tiacciBRAFMutationsHairycell2011a
2011 MZL Sanger 5 4 (80.0) BIRC3 @rossiAlterationBIRC3Multiple2011a
2012 MZL exome 21 10 (47.6) ARID1A @rossiCodingGenomeSplenic2012c
2012 BL RNA-seq/WGS/exome 5 5 (100.0) CCND3 @richterRecurrentMutationID32012a
2012 DLBCL Sanger 1 0 (0.0) MIR142 @kwanhianMicroRNA142Mutated202012b
2012 DLBCL WGS 1 1 (100.0) CXCR4 @khodabakhshiRecurrentTargetsAberrant2012
2012 PMBL Array/Sanger 2 2 (100.0) MAP3K14 @ottoGeneticLesionsTRAF32012a
2012 DLBCL exome 39 18 (46.2) ACTB @lohrDiscoveryPrioritizationSomatic2012a
2012 MZL Panel 2 2 (100.0) CARD11 @yanBCRTLRSignaling2012a
2012 BL exome 60 3 (5.0) ACAD9 @loveGeneticLandscapeMutations2012
2012 BL RNA-seq 20 4 (20.0) C16orf48 @schmitzBurkittLymphomaPathogenesis2012
2012 MZL Array/Sanger 1 1 (100.0) ATM @braggioGenomicAnalysisMarginal2012
2013 MCL WGS/exome 27 11 (40.7) ABCA3 @beaLandscapeSomaticMutations2013
2013 DLBCL exome 16 8 (50.0) ARID1A @zhangGeneticHeterogeneityDiffuse2013
2013 DLBCL Sanger 1 1 (100.0) EBF1 @bohleRoleEarlyBcell2013
2013 DLBCL WGS 38 9 (23.7) ABI3BP @morinMutationalStructuralAnalysis2013
2013 MZL exome 8 0 (0.0) AMOTL1 @parryWholeExomeSequencing2013
2014 MCL exome 28 2 (7.1) ANK2 @zhangGenomicLandscapeMantle2014
2014 PMBL WGS/Sanger 1 1 (100.0) PTPN1 @gunawardanaRecurrentSomaticMutations2014c
2014 BL Sanger 3 1 (33.3) ARHGEF1 @muppidiLossSignalingGa132014b
2015 BL RNA-seq 1 0 (0.0) CCNF @abateDistinctViralMutational2015a
2015 DLBCL Sanger 1 1 (100.0) STAT6 @yildizActivatingSTAT6Mutations2015c
2015 PMBL Sanger 1 1 (100.0) CIITA @mottokGenomicAlterationsCIITA2015b
2015 PMBL Sanger 1 1 (100.0) CD58 @schneiderAlterationsCD58Gene2015a
2015 PMBL exome 29 11 (37.9) ARIH2 @reichelFlowSortingExome2015a
2015 DLBCL Sanger 1 0 (0.0) MAP2K1 @shinBRAFV600EMAP2K12015
2016 MZL exome 1 1 (100.0) KLHL6 @ganapathiGeneticLandscapeDural2016
2016 DLBCL exome 1 1 (100.0) XPO1 @mareschalWholeExomeSequencing2016
2016 FL WGS 3 3 (100.0) ATP6AP1 @okosunRecurrentMTORC1activatingRRAGC2016a
2016 PMBL Sanger 1 1 (100.0) XPO1 @jardinRecurrentMutationsExportin2016a
2016 PMBL exome/Sanger 1 1 (100.0) NFKBIE @mansouriFrequentNFKBIEDeletions2016
2016 FL exome 1 1 (100.0) MAP2K1 @louissaintPediatrictypeNodalFollicular2016a
2016 MZL exome/panel 31 8 (25.8) ABCA13 @spinaGeneticsNodalMarginal2016b
2016 MCL exome 1 1 (100.0) CARD11 @wuGeneticHeterogeneityPrimary2016
2016 DLBCL exome 2 2 (100.0) NFKBIE @morinGeneticLandscapesRelapsed2016
2017 MZL panel 2 0 (0.0) CD9B @vandenbrandRecurrentMutationsGenes2017
2017 MZL exome 28 2 (7.1) ARHGAP20 @jalladesExomeSequencingIdentifies2017
2017 FL exome 22 17 (77.3) ARID1A @krysiakRecurrentSomaticMutations2017b
2017 DLBCL exome 3 3 (100.0) BTK @albuquerqueEnhancingKnowledgeDiscovery2017a
2017 DLBCL exome 59 6 (10.2) ANKRD17 @reddyGeneticFunctionalDrivers2017
2018 PMBL exome 10 1 (10.0) AKAP6 @tiacciPervasiveMutationsJAKSTAT2018b
2018 DLBCL exome 19 2 (10.5) CCL4 @chapuyMolecularSubtypesDiffuse2018b
2018 PMBL Sanger 1 1 (100.0) IL4R @viganoSomaticIL4RMutations2018b
2018 DLBCL WGS 19 7 (36.8) AICDA @arthurGenomewideDiscoverySomatic2018
2018 DLBCL exome 16 7 (43.8) CXCR5 @schmitzGeneticsPathogenesisDiffuse2018a
2019 PMBL exome 7 4 (57.1) ACTB @wienandGenomicAnalysesFlowsorted2019b
2019 BL exome 1 0 (0.0) KMT2C @zhouSporadicEndemicBurkitt2019
2019 BL RNA-seq/exome 39 4 (10.3) ALPK2 @paneaWholeGenomeLandscape2019
2019 BL WGS 13 9 (69.2) BACH2 @grandeGenomewideDiscoverySomatic2019
2019 PMBL exome 21 6 (28.6) CISH @mottokIntegrativeGenomicAnalysis2019b
2020 MCL WGS 5 3 (60.0) BCOR @nadeuGenomicEpigenomicInsights2020b
2020 FL panel 1 1 (100.0) CTSS @barariaCathepsinAlterationsInduce2020c
2020 DLBCL exome/panel 1 1 (100.0) MS4A1 @rushtonGeneticEvolutionaryPatterns2020
2020 MCL WGS/exome 7 6 (85.7) B2M @pararajalingamCodingNoncodingDrivers2020
2020 PMBL panel 10 1 (10.0) ACTG1 @deschGenotypingCirculatingTumor2020
2021 DLBCL WGS 38 3 (7.9) ACTG1 @hubschmannMutationalMechanismsShaping2021b
2021 PMBL exome 11 5 (45.5) ABCA13 @sarkozyMutationalLandscapeGray2021a
2021 PMBL exome 14 6 (42.9) BIRC3 @dunsCharacterizationDLBCLPMBL2021b
2022 BL panel 25 0 (0.0) ADAMTS5 @burkhardtClinicalRelevanceMolecular2022b
2023 BL WGS 6 2 (33.3) CDKN2C @thomasGeneticSubgroupsInform2023
2023 FL exome 20 1 (5.0) ABL2 @russler-germainMutationsAssociatedProgression2023b
2023 PMBL exome 7 2 (28.6) ARID5B @gomezUltraDeepSequencingReveals2023

References

⚠️ **GitHub.com Fallback** ⚠️