hubschmannMutationalMechanismsShaping2021b - morinlab/LLMPP GitHub Wiki
Entity | Total | Tier 1 | Tier 2 | Tier 2 Pass | Tier 2 Fail | Fail rate |
---|---|---|---|---|---|---|
DLBCL or FL | 38 | 4 | 34 | 31 | 3 | 9% |
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sankey-beta
New to this study, FL or DLBCL Tier 1, 4
New to this study, FL or DLBCL Tier 2, 34
FL or DLBCL Tier 2, Pass QC, 31
FL or DLBCL Tier 2, Fail QC, 3
New gene | FL tier | DLBCL tier |
---|---|---|
ACTG1 | 2 | 1 |
EEF1A1 | 1 | 1 |
FBXO11 | 1 | |
VMA21 | 1 |
New gene | FL tier | DLBCL tier | Average variant quality | QC outcome |
---|---|---|---|---|
ADAMTS1 | 2 | ★ ★ ★ ☆ ☆ | Pass | |
ANKRD12 | 2 | ★ ★ ★ ☆ ☆ | Pass | |
ATP6V1A | 2 | ★ ★ ★ ★ ☆ | Pass | |
CADPS2 | 2 | ★ ★ ★ ★ ☆ | Pass | |
CDC42BPB | 2 | ★ ★ ★ ☆ ☆ | Pass | |
CNOT2 | 2 | ★ ★ ★ ★ ☆ | Pass | |
CPNE8 | 2 | ★ ★ ★ ★ ☆ | Pass | |
DHX15 | 2 | ★ ★ ★ ★ ☆ | Pass | |
DHX16 | 2 | ★ ★ ★ ★ ☆ | Pass | |
DNM2 | 2 | ★ ★ ★ ☆ ☆ | Pass | |
FZR1 | 2 | ★ ★ ★ ☆ ☆ | Pass | |
IKBKE | 2 | ★ ★ ★ ★ ☆ | Pass | |
IRF1 | 2 | ★ ★ ★ ☆ ☆ | Pass | |
JUP | 2 | ★ ★ ★ ★ ☆ | Pass | |
LAPTM5 | 2 | 2 | ★ ★ ★ ★ ☆ | Pass |
LRP12 | 2 | ★ ★ ★ ☆ ☆ | Pass | |
MGEA5 | 2 | ★ ★ ★ ☆ ☆ | Pass | |
MYCBP2 | 2 | ★ ★ ★ ★ ☆ | Pass | |
PDS5B | 2 | 2 | ★ ★ ★ ☆ ☆ | Pass |
PNPO | 2 | ★ ★ ★ ☆ ☆ | Pass | |
PPP4C | 2 | ★ ★ ★ ★ ☆ | Pass | |
PRKDC | 2 | 2 | ★ ★ ★ ☆ ☆ | Pass |
RAC2 | 2 | ★ ★ ★ ☆ ☆ | Pass | |
RBM6 | 2 | ★ ★ ★ ☆ ☆ | Pass | |
SIAH2 | 2 | ★ ★ ★ ☆ ☆ | Pass | |
SLC34A2 | 2 | ★ ★ ★ ☆ ☆ | Pass | |
TPP1 | 2 | ★ ★ ★ ☆ ☆ | Pass | |
TRAF6 | 2 | ★ ★ ★ ☆ ☆ | Pass | |
UNC5B | 2 | ★ ★ ★ ☆ ☆ | Pass | |
WNK1 | 2 | ★ ★ ★ ☆ ☆ | Pass | |
ZNF217 | 2 | ★ ★ ★ ☆ ☆ | Pass | |
HLA-DQA1 | 2 | ★ ★☆ ☆ ☆ | Fail | |
GAK | 2 | ★ ★ ☆ ☆ ☆ | Fail | |
NR2F2 | 2 | ★ ★ ☆ ☆ ☆ | Fail |