hubschmannMutationalMechanismsShaping2021b - morinlab/LLMPP GitHub Wiki

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Summary of novel genes

Entity Total Tier 1 Tier 2 Tier 2 Pass Tier 2 Fail Fail rate
DLBCL or FL 38 4 34 31 3 9% 
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New to this study, FL or DLBCL Tier 1, 4
New to this study, FL or DLBCL Tier 2, 34
FL or DLBCL Tier 2, Pass QC, 31
FL or DLBCL Tier 2, Fail QC, 3

Novel genes reported in this study

Tier 1

New gene FL tier DLBCL tier
ACTG1 2 1
EEF1A1 1 1
FBXO11 1
VMA21 1

Tier 2

New gene FL tier DLBCL tier Average variant quality QC outcome
ADAMTS1 2 ★ ★ ★ ☆ ☆ Pass
ANKRD12 2 ★ ★ ★ ☆ ☆ Pass
ATP6V1A 2 ★ ★ ★ ★ ☆ Pass
CADPS2 2 ★ ★ ★ ★ ☆ Pass
CDC42BPB 2 ★ ★ ★ ☆ ☆ Pass
CNOT2 2 ★ ★ ★ ★ ☆ Pass
CPNE8 2 ★ ★ ★ ★ ☆ Pass
DHX15 2 ★ ★ ★ ★ ☆ Pass
DHX16 2 ★ ★ ★ ★ ☆ Pass
DNM2 2 ★ ★ ★ ☆ ☆ Pass
FZR1 2 ★ ★ ★ ☆ ☆ Pass
IKBKE 2 ★ ★ ★ ★ ☆ Pass
IRF1 2 ★ ★ ★ ☆ ☆ Pass
JUP 2 ★ ★ ★ ★ ☆ Pass
LAPTM5 2 2 ★ ★ ★ ★ ☆ Pass
LRP12 2 ★ ★ ★ ☆ ☆ Pass
MGEA5 2 ★ ★ ★ ☆ ☆ Pass
MYCBP2 2 ★ ★ ★ ★ ☆ Pass
PDS5B 2 2 ★ ★ ★ ☆ ☆ Pass
PNPO 2 ★ ★ ★ ☆ ☆ Pass
PPP4C 2 ★ ★ ★ ★ ☆ Pass
PRKDC 2 2 ★ ★ ★ ☆ ☆ Pass
RAC2 2 ★ ★ ★ ☆ ☆ Pass
RBM6 2 ★ ★ ★ ☆ ☆ Pass
SIAH2 2 ★ ★ ★ ☆ ☆ Pass
SLC34A2 2 ★ ★ ★ ☆ ☆ Pass
TPP1 2 ★ ★ ★ ☆ ☆ Pass
TRAF6 2 ★ ★ ★ ☆ ☆ Pass
UNC5B 2 ★ ★ ★ ☆ ☆ Pass
WNK1 2 ★ ★ ★ ☆ ☆ Pass
ZNF217 2 ★ ★ ★ ☆ ☆ Pass
HLA-DQA1 2 ★ ★☆ ☆ ☆ Fail
GAK 2 ★ ★ ☆ ☆ ☆ Fail
NR2F2 2 ★ ★ ☆ ☆ ☆ Fail

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