Projects & Data - meyermicrobiolab/Meyer_Lab_Resources GitHub Wiki
In situ Microbiome survey, Florida, Bioproject PRJNA521988
Vibrio corallilyticus comparative genomics, Bioproject PRJNA625269
- Paper in Frontiers in Microbiology
- SRA Data - Vibrio coralliilyticus sequencing reads
- Genome Assembly - Vibrio coralliilyticus isolates assembled genomes
Disease Transmission Metagenomes Bioproject PRJNA875070
- spaceholder for paper
- SRA Data and metagenome assembled genomes (MAGs)
- Project code
Time Series - disease transmission 2023-2024 Bioproject PRJNA1120034
- SRA Data for RNAseq and Amplicons Bioproject PRJNA931253
- SRA Data Bioproject PRJNA950916
- SRA Data spaceholder
- SRA Data Bioproject PRJNA1120359
- SRA data Bioproject PRJNA1164037
- SRA data Bioproject PRJNA1189597
- SRA data spaceholder - MS
- SRA data spaceholder - MS
- paper on McH1-7 genome and tank trials
- Tank trials 16S sequencing reads: Bioproject PRJNA801145
- Probiotic strain Pseudoalteromonas McH1-7 Genome: Bioproject PRJNA639770
- Potential pathogenic strain Leisingera McT4-56 Genome: Bioproject PRJNA769041
- Potential pathogenic strain Alteromonas McT4-15 Genome: Bioproject PRJNA769042
The field trials spanned multiple years of DEP funding.
- FY19-20: Broward County BS1 site, MCAV/McH1-7, initial setup completed but experiment halted because of COVID (tech=JT), no paper currently planned
FY20-21: Broward County BS2 site, MCAV/McH1-7, probiotics vs control, monitoring through March 2023 (tech = MS) Bioproject PRJNA1143377
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paper on Field trial at BS2 site (Broward County), MCAV/McH1-7, probiotics vs control
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FY21-22: Broward County BS3 site, MCAV/McH1-7, probiotics vs control, monitoring through March 2023 (tech = SR), no paper currently planned
FY21-22: Keys MK48-5 site, MCAV/McH1-7 and CNAT/Cnat2-18.1, probiotics vs control, monitoring through March 2023 (tech = SR)
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paper in prep: MK48-5 field trial, CNAT/Cnat2-18.1, probiotics vs control, with genome description
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FY22-23: Keys Frank's point site, MCAV/McH1-7 and CNAT/Cnat2-18.1, probiotics vs antibiotics (no control) (techs = SR, KJ), no paper currently planned
FY23-24: Keys MK48-6 site, MCAV/McH1-7, probiotics vs antibiotics vs control (tech = KJ) PRJNA1123712 Project Code
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paper in prep: MK48-6 site, MCAV/McH1-7, probiotics vs antibiotics vs control, through 2023 bleaching event - story may be bleaching rather than treatments
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FY23-24: Keys Cheeca Rocks site, MCAV/McH1-7 and CNAT/Cnat2-18.1, probiotics+antibiotics vs control (tech = KJ) PRJNA1123927
- Genome Assemblies - assembled genomes Bioproject PRJNA795563
- Sweet et al meta-analysis of cultured coral-associated bacteria with 74 genomes
- Paper in SIGS - Genome of Halomonas R1t3
- SRA Data, Bioproject PRJNA269585 - Halomonas R1t3 genome
- SRA Data, Bioproject PRJNA343499 - other isolate genomes
- SRA Data, Bioproject PRJNA388052 - Mcav metagenome
- SRA Data: Metagenomes BioProject PRJNA925892
- Zenodo repository: Florida Keys samples
- Zenodo repository: ECA (Broward Co.) samples
- SRA Data - EQ
- project code - EQ
- RNAseq raw reads, BioProject PRJNA1041355 - SSID only
- RNAseq raw reads, BioProject PRJNA1098207 - ATEN only
- Zenodo repository with RNAseq assemblies and annotated transcript count files - SSID only
- 16S amplicons from tank experiments -JM
- project code for 16S - JM
- project code for RNAseq - wiki style?
- SRA data, Bioproject PRJNA1277205
- project code - JM
- SRA Data spaceholder - EQ
- SRA Data spaceholder - DD
- SRA Data, BioProject PRJNA269585 - Microbiome Shifts/Comparative Metagenomics/looekeyolide papers
- Paper - Microbiome shifts
- Paper - Comparative metagenomics
- Paper - Looekeyolide biosynthesis
- Spaceholder for Metatranscriptomics paper
- SRA Data - Metatranscriptomics paper ---NEED TO ADD FLORIDA SAMPLES- Julie
- Paper - Cryptic diversity in SSID
- SRA Data - BBD in Siderastrea ---Amplicons: BioProject PRJNA645365 and Metagenomes: BioProject PRJNA647383
- Genbank Data - Roseofilum MAGs (SSID and non-SSID) also in BioProject PRJNA647383