Page Index - mestato/EPP622_2024 GitHub Wiki
48 page(s) in this GitHub Wiki:
- Home
- Welcome to EPP622, Fall 2024!
- Quick Log In
- Quick Schedule
- Full Schedule
- Class 14. Thursday October 3 - Introduction to ISAAC-NG
- Class 15. Thursday October 10 - ISAAC‐NG Continued
- Class 16. Tuesday October 15 - Long Reads I
- Class 17. Thursday October 17 - Long Reads II
- Class 18. Tuesday October 22 - Long Reads III
- Class 19. Thursday October 24 - DMPs and Long Reads IV
- Class 20. Tuesday October 29 - Test #3 Review Session
- Assembly
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- Classes 1 6
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- Classes 7 13
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- Final Project
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- Genome Assembly
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- Get on Sphinx
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- Getting started with PowerShell (Windows users)
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- Install Conda and Long Read QC
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- Lab: BLAST and Diamond
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- Lab: ISAAC‐NG Continued
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- Lab: ISAAC‐NG Intro
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- Lab: Short read variation I ‐ Read QC and trimming
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- Lab: Short read variation II Read mapping and Loops
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- Lab: Short read variation III Variant calling with GATK
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- Long Read Mapping and Calling SVs with CuteSV
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- Long Read QC and Assembly
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- OIT Bioinformatics Symposium and Isaac Trainings
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- SnpEff and SnpSift
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