Page Index - maxlcummins/APEC-MGEN-2018 GitHub Wiki 6 page(s) in this GitHub Wiki: Home 1. Phylogenetic classification, genotyping and data processing 2. Generation of Phylosift tree and subsequent annotation in iTOL 3. Generation of Phylosift trees with gene table 4. Generation of ST117 snippy phylogenomic Tree 5. Generation of read mapping plasmid figure