Some tool ideas and potential projects - lmmx/devnotes GitHub Wiki

• Academic document editor

• Altmetrics network explorer

• Update TabSave:

  • CrossRef for PDF metadata not Google Scholar perhaps for reliability
  • Twitter timeline access for tweeted papers (via Vaughn)
  • ...better DOI performance
  • Reply to Tarecq / test on Mac
  • Use this with ResearchGate PDFs somehow?

• One-click citation button:

  doi ==> <a href="http://dx.doi.org/..." title="{via CrossRef}" data-doi="{doi}">{APA citation}</a> ?

• GO tool/s ? In future, non-protein entities will be annotated

• Add Wiki link title annotation http://en.wikipedia.org/w/api.php?action=query&format=json&titles= similar to CrossRef API (but easier)

• Make an R package?

• Journal statistics analysis

• Check out Ben Moore's work in more detail (github.com/blmoore/blmR)

• Check out rforbiochemists workshop

• Parse the Jack Baskin School of Engineering class listings for free course materials

  • e.g. Application and Analysis of Microarrays

• Read about iterators in Julia

• Read annotation-related junk like this

• Try Kallisto (see review)

• Latest Shiny has ability to communicate Google Maps API change to R Also

• Computational Protein Structure Prediction and Design

• Integrated Analysis in Systems Biology

• learn.pl

• Entropy/enthalpy compensation

Site junk:

• Post pagination link URL rewrite with aliases, «POST TITLE« // »POST TITLE»
  • maybe a data- attrib ::before:hover popover thing rather than olde worlde title attribute tooltip

Memo:

• Former MVC listings, SB1, DtR

• Mustafa's V&A talk Friday 29th May 18:30-20:00

• Email Eriko re: further sources of antibiotics than polyketides/NRPS

• register -- ? p r m t s & co.

Chodera lab:

• "Replace GBSA param reading with standard format"